Wouter Boomsma
Wouter Boomsma
Associate Professor, Department of Computer Science, University of Copenhagen
Verified email at di.ku.dk
TitleCited byYear
Ancient biomolecules from deep ice cores reveal a forested southern Greenland
E Willerslev, E Cappellini, W Boomsma, R Nielsen, MB Hebsgaard, ...
Science 317 (5834), 111-114, 2007
Statistical assignment of DNA sequences using Bayesian phylogenetics
K Munch, W Boomsma, JP Huelsenbeck, E Willerslev, R Nielsen
Systematic biology 57 (5), 750-757, 2008
A generative, probabilistic model of local protein structure
W Boomsma, KV Mardia, CC Taylor, J Ferkinghoff-Borg, A Krogh, ...
Proceedings of the National Academy of Sciences 105 (26), 8932-8937, 2008
Combining experiments and simulations using the maximum entropy principle
W Boomsma, J Ferkinghoff-Borg, K Lindorff-Larsen
PLoS computational biology 10 (2), 2014
Potentials of mean force for protein structure prediction vindicated, formalized and generalized
T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ...
PloS one 5 (11), 2010
Structure of a functional amyloid protein subunit computed using sequence variation
P Tian, W Boomsma, Y Wang, DE Otzen, MH Jensen, K Lindorff-Larsen
Journal of the American Chemical Society 137 (1), 22-25, 2015
Fast phylogenetic DNA barcoding
K Munch, W Boomsma, E Willerslev, R Nielsen
Philosophical Transactions of the Royal Society B: Biological Sciences 363 …, 2008
Beyond rotamers: a generative, probabilistic model of side chains in proteins
T Harder, W Boomsma, M Paluszewski, J Frellsen, KE Johansson, ...
BMC bioinformatics 11 (1), 306, 2010
Comparing molecular dynamics force fields in the essential subspace
F Martín-García, E Papaleo, P Gomez-Puertas, W Boomsma, ...
PLoS One 10 (3), 2015
3d steerable cnns: Learning rotationally equivariant features in volumetric data
M Weiler, M Geiger, M Welling, W Boomsma, TS Cohen
Advances in Neural Information Processing Systems, 10381-10392, 2018
Inference of structure ensembles of flexible biomolecules from sparse, averaged data
S Olsson, J Frellsen, W Boomsma, KV Mardia, T Hamelryck
PLoS One 8 (11), 2013
Probabilistic determination of native state ensembles of proteins
S Olsson, BR Vögeli, A Cavalli, W Boomsma, J Ferkinghoff-Borg, ...
Journal of Chemical Theory and Computation 10 (8), 3484-3491, 2014
ENCORE: software for quantitative ensemble comparison
M Tiberti, E Papaleo, T Bengtsen, W Boomsma, K Lindorff-Larsen
PLoS computational biology 11 (10), 2015
PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure
W Boomsma, J Frellsen, T Harder, S Bottaro, KE Johansson, P Tian, ...
Journal of computational chemistry 34 (19), 1697-1705, 2013
Full cyclic coordinate descent: solving the protein loop closure problem in Cα space
W Boomsma, T Hamelryck
BMC bioinformatics 6 (1), 159, 2005
Spherical convolutions and their application in molecular modelling
W Boomsma, J Frellsen
Advances in Neural Information Processing Systems, 3433-3443, 2017
Fast large-scale clustering of protein structures using Gauss integrals
T Harder, M Borg, W Boomsma, P Røgen, T Hamelryck
Bioinformatics 28 (4), 510-515, 2012
Bayesian inference of protein ensembles from SAXS data
LD Antonov, S Olsson, W Boomsma, T Hamelryck
Physical Chemistry Chemical Physics 18 (8), 5832-5838, 2016
Subtle Monte Carlo updates in dense molecular systems
S Bottaro, W Boomsma, K E. Johansson, C Andreetta, T Hamelryck, ...
Journal of Chemical Theory and Computation 8 (2), 695-702, 2012
Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts
W Boomsma, P Tian, J Frellsen, J Ferkinghoff-Borg, T Hamelryck, ...
Proceedings of the National Academy of Sciences 111 (38), 13852-13857, 2014
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