| ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks G Bindea, B Mlecnik, H Hackl, P Charoentong, M Tosolini, A Kirilovsky, ... Bioinformatics 25 (8), 1091-1093, 2009 | 5747 | 2009 |
| Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... Cell reports 18 (1), 248-262, 2017 | 3157 | 2017 |
| Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data F Finotello, C Mayer, C Plattner, G Laschober, D Rieder, H Hackl, ... Genome medicine 11, 1-20, 2019 | 875 | 2019 |
| Predicting survival from colorectal cancer histology slides using deep learning: A retrospective multicenter study JN Kather, J Krisam, P Charoentong, T Luedde, E Herpel, CA Weis, ... PLoS medicine 16 (1), e1002730, 2019 | 749 | 2019 |
| Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy M Angelova, P Charoentong, H Hackl, ML Fischer, R Snajder, ... Genome biology 16, 1-17, 2015 | 502 | 2015 |
| Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ... Cell 183 (3), 818-834. e13, 2020 | 338 | 2020 |
| Biomolecular network reconstruction identifies T-cell homing factors associated with survival in colorectal cancer B Mlecnik, M Tosolini, P Charoentong, A Kirilovsky, G Bindea, A Berger, ... Gastroenterology 138 (4), 1429-1440, 2010 | 337 | 2010 |
| Coordination of intratumoral immune reaction and human colorectal cancer recurrence M Camus, M Tosolini, B Mlecnik, F Pages, A Kirilovsky, A Berger, ... Cancer research 69 (6), 2685-2693, 2009 | 329 | 2009 |
| NKG2A blockade potentiates CD8 T cell immunity induced by cancer vaccines N van Montfoort, L Borst, MJ Korrer, M Sluijter, KA Marijt, SJ Santegoets, ... Cell 175 (7), 1744-1755. e15, 2018 | 285 | 2018 |
| Computational genomics tools for dissecting tumour–immune cell interactions H Hackl, P Charoentong, F Finotello, Z Trajanoski Nature Reviews Genetics 17 (8), 441-458, 2016 | 265 | 2016 |
| Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution M Efremova, D Rieder, V Klepsch, P Charoentong, F Finotello, H Hackl, ... Nature communications 9 (1), 32, 2018 | 259 | 2018 |
| Topography of cancer-associated immune cells in human solid tumors JN Kather, M Suarez-Carmona, P Charoentong, CA Weis, D Hirsch, ... Elife 7, e36967, 2018 | 254 | 2018 |
| Pancancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade. Cell Rep. 2017; 18: 248–62 P Charoentong, F Finotello, M Angelova, C Mayer, M Efremova, D Rieder, ... | 176 | 2010 |
| Intratumoral HPV16-specific T cells constitute a type I–oriented tumor microenvironment to improve survival in HPV16-driven oropharyngeal cancer MJP Welters, W Ma, SJAM Santegoets, R Goedemans, I Ehsan, ... Clinical Cancer Research 24 (3), 634-647, 2018 | 165 | 2018 |
| The thioredoxin system in breast cancer cell invasion and migration M Bhatia, KL McGrath, G Di Trapani, P Charoentong, F Shah, MM King, ... Redox biology 8, 68-78, 2016 | 159 | 2016 |
| OXPHOS remodeling in high-grade prostate cancer involves mtDNA mutations and increased succinate oxidation B Schöpf, H Weissensteiner, G Schäfer, F Fazzini, P Charoentong, ... Nature Communications 11 (1), 1487, 2020 | 100 | 2020 |
| In Silico Modeling of Immunotherapy and Stroma-Targeting Therapies in Human Colorectal Cancer JN Kather, J Poleszczuk, M Suarez-Carmona, J Krisam, P Charoentong, ... Cancer research 77 (22), 6442-6452, 2017 | 100 | 2017 |
| High STAT1 mRNA levels but not its tyrosine phosphorylation are associated with macrophage infiltration and bad prognosis in breast cancer P Tymoszuk, P Charoentong, H Hackl, R Spilka, E Müller-Holzner, ... BMC cancer 14, 1-13, 2014 | 89 | 2014 |
| TIminer: NGS data mining pipeline for cancer immunology and immunotherapy E Tappeiner, F Finotello, P Charoentong, C Mayer, D Rieder, Z Trajanoski Bioinformatics 33 (19), 3140-3141, 2017 | 87 | 2017 |
| Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts R Greussing, M Hackl, P Charoentong, A Pauck, R Monteforte, ... BMC genomics 14, 1-19, 2013 | 72 | 2013 |
