Sergey Knyazev
Sergey Knyazev
Verified email at student.gsu.edu
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Year
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data
P Skums, A Zelikovsky, R Singh, W Gussler, Z Dimitrova, S Knyazev, ...
Bioinformatics 34 (1), 163-170, 2018
322018
Inference of genetic relatedness between viral quasispecies from sequencing data
O Glebova, S Knyazev, A Melnyk, A Artyomenko, Y Khudyakov, ...
BMC genomics 18 (10), 81-88, 2017
142017
Modeling conformational redox‐switch modulation of human succinic semialdehyde dehydrogenase
G Tamazian, J Ho Chang, S Knyazev, E Stepanov, KJ Kim, Y Porozov
Proteins: Structure, Function, and Bioinformatics 83 (12), 2217-2229, 2015
122015
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era
S Knyazev, L Hughes, P Skums, A Zelikovsky
Briefings in bioinformatics, 2020
72020
Repeat-aware evaluation of scaffolding tools
I Mandric, S Knyazev, A Zelikovsky
Bioinformatics 34 (15), 2530-2537, 2018
62018
Benchmarking of computational error-correction methods for next-generation sequencing data
K Mitchell, JJ Brito, I Mandric, Q Wu, S Knyazev, S Chang, LS Martin, ...
Genome biology 21 (1), 1-13, 2020
52020
CliqueSNV: Scalable Reconstruction of Intra-Host Viral Populations from NGS Reads
S Knyazev, V Tsyvina, A Melnyk, A Artyomenko, T Malygina, YB Porozov, ...
bioRxiv, 264242, 2018
52018
SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and Therapeutics
HM Rando, CS Greene, MP Robson, SM Boca, N Wellhausen, R Lordan, ...
Manubot, 2020
32020
Technology dictates algorithms: Recent developments in read alignment
M Alser, J Rotman, K Taraszka, H Shi, PI Baykal, HT Yang, V Xue, ...
arXiv preprint arXiv:2003.00110, 2020
32020
Using earth mover’s distance for viral outbreak investigations
A Melnyk, S Knyazev, F Vannberg, L Bunimovich, P Skums, A Zelikovsky
BMC genomics 21 (5), 1-9, 2020
22020
MicrobeTrace: retooling molecular epidemiology for rapid public health response
EM Campbell, AA Boyles, A Shankar, J Kim, S Knyazev, WM Switzer
BioRxiv, 2020
22020
Metabolic analysis of metatranscriptomic data from planktonic communities
I Mandric, S Knyazev, C Padilla, F Stewart, II Măndoiu, A Zelikovsky
International Symposium on Bioinformatics Research and Applications, 396-402, 2017
22017
Coarse-grained model of protein interaction for bio-inspired nano-communication
S Knyazev, S Tarakanov, V Kuznetsov, Y Porozov, Y Koucheryavy, ...
2014 6th International Congress on Ultra Modern Telecommunications and …, 2014
22014
Prediction of protein conformational mobility with validation using small-angle X-ray scattering
SN Knyazev, VY Kalyakin, IN Deryabin, BA Fedorov, AV Smirnov, ...
Biophysics 60 (6), 886-892, 2015
12015
Prediction of Protein Conformational Mobility and Evaluation of Its Reliability Using Small-Angle X-ray Scattering
SN Knyazev, VY Kalyakin, IN Deryabin, BA Fedorov, AV Smirnov, ...
Biofizika 60 (6), 1069-1076, 2015
12015
Protein conformation motion modeling using sep-cma-es
M Buzdalov, S Knyazev, Y Porozov
2014 13th International Conference on Machine Learning and Applications, 35-40, 2014
12014
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data
F Rondel, R Hosseini, B Sahoo, S Knyazev, I Mandric, F Stewart, ...
International Symposium on Bioinformatics Research and Applications, 335-343, 2020
2020
Molecular Epidemiology of the HIV-1 Subtype B Sub-Epidemic in Bulgaria
I Alexiev, E M Campbell, S Knyazev, Y Pan, L Grigorova, R Dimitrova, ...
Viruses 12 (4), 441, 2020
2020
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction
S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ...
bioRxiv, 264242, 2020
2020
CliqueSNV: An Efficient Noise Reduction Technique for Accurate Assembly of Viral Variants from NGS Data
S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ...
bioRxiv, 264242, 2020
2020
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Articles 1–20