| Dynameomics: a comprehensive database of protein dynamics MW van der Kamp, RD Schaeffer, AL Jonsson, AD Scouras, AM Simms, ... Structure 18 (4), 423-435, 2010 | 168 | 2010 |
| Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations DAC Beck, AL Jonsson, RD Schaeffer, KA Scott, R Day, RD Toofanny, ... Protein Engineering, Design & Selection 21 (6), 353-368, 2008 | 83 | 2008 |
| Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations AM Simms, RD Toofanny, C Kehl, NC Benson, V Daggett Protein engineering, design & selection 21 (6), 369-377, 2008 | 59 | 2008 |
| Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data C Kehl, AM Simms, RD Toofanny, V Daggett Protein Engineering, Design & Selection 21 (6), 379-386, 2008 | 49 | 2008 |
| Understanding protein unfolding from molecular simulations RD Toofanny, V Daggett Wiley Interdisciplinary Reviews: Computational Molecular Science 2 (3), 405-423, 2012 | 44 | 2012 |
| GB1 is not a two-state folder: identification and characterization of an on-pathway intermediate A Morrone, R Giri, RD Toofanny, C Travaglini-Allocatelli, M Brunori, ... Biophysical journal 101 (8), 2053-2060, 2011 | 36 | 2011 |
| A comprehensive multidimensional-embedded, one-dimensional reaction coordinate for protein unfolding/folding RD Toofanny, AL Jonsson, V Daggett Biophysical journal 98 (11), 2671-2681, 2010 | 30 | 2010 |
| Simulations of multi-directional forced unfolding of titin I27 RD Toofanny, PM Williams Journal of Molecular Graphics and Modelling 24 (5), 396-403, 2006 | 20 | 2006 |
| DIVE: a data intensive visualization engine D Bromley, SJ Rysavy, R Su, RD Toofanny, T Schmidlin, V Daggett Bioinformatics 30 (4), 593-595, 2014 | 19 | 2014 |
| Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection RD Toofanny, AM Simms, DAC Beck, V Daggett BMC bioinformatics 12, 1-11, 2011 | 8 | 2011 |
| Evolutionary drivers of protein shape G Shannon, CR Marples, RD Toofanny, PM Williams Scientific Reports 9 (1), 11873, 2019 | 7 | 2019 |
| Shared unfolding pathways of unrelated immunoglobulin-like β-sandwich proteins RD Toofanny, S Calhoun, AL Jonsson, V Daggett Protein Engineering, Design and Selection 32 (7), 331-345, 2019 | 1 | 2019 |
| Investigations into the Mechanical Unfolding of Proteins in silico RD Toofanny University of Nottingham, 2005 | 1 | 2005 |
| Long time-scale simulations of protein unfolding under force using the stochastic difference equation in length algorithm. RD Toofanny, PM Williams, R Elber Biophysical Journal 88 (1), 185A-185A, 2005 | 1 | 2005 |
| Molecular Dynamics Simulations of Consensus Tetratricopeptide Repeat Proteins RD Toofanny, AL Cortajarena, L Regan, V Daggett Biophysical Journal 98 (3), 636a-637a, 2010 | | 2010 |
