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Benoit Morel
Benoit Morel
Heidelberg Institute of Theoretical Studies
Verified email at h-its.org
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Year
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis
Bioinformatics 35 (21), 4453-4455, 2019
24542019
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri
Molecular biology and evolution 37 (1), 291-294, 2020
11762020
EPA-ng: massively parallel evolutionary placement of genetic sequences
P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ...
Systematic biology 68 (2), 365-369, 2019
4502019
Phylogenetic analysis of SARS-CoV-2 data is difficult
B Morel, P Barbera, L Czech, B Bettisworth, L Hübner, S Lutteropp, ...
Molecular biology and evolution 38 (5), 1777-1791, 2021
1492021
GeneRax: a tool for species-tree-aware maximum likelihood-based gene family tree inference under gene duplication, transfer, and loss
B Morel, AM Kozlov, A Stamatakis, GJ Szöllősi
Molecular biology and evolution 37 (9), 2763-2774, 2020
952020
ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes
B Morel, AM Kozlov, A Stamatakis
Bioinformatics 35 (10), 1771-1773, 2019
552019
SpeciesRax: a tool for maximum likelihood species tree inference from gene family trees under duplication, transfer, and loss
B Morel, P Schade, S Lutteropp, TA Williams, GJ Szöllősi, A Stamatakis
Molecular biology and evolution 39 (2), msab365, 2022
332022
RAxML-NG: a fast, scalable, and user-friendly tool for maximum likelihood phylogenetic inference. bioRxiv 447110
A Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis
312018
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations
N Comte, B Morel, D Hasić, L Guéguen, B Boussau, V Daubin, S Penel, ...
Bioinformatics 36 (18), 4822-4824, 2020
252020
Photoreceptor diversification accompanies the evolution of Anthozoa
SG Gornik, BG Bergheim, B Morel, A Stamatakis, NS Foulkes, A Guse
Molecular biology and evolution 38 (5), 1744-1760, 2021
222021
NetRAX: accurate and fast maximum likelihood phylogenetic network inference
S Lutteropp, C Scornavacca, AM Kozlov, B Morel, A Stamatakis
Bioinformatics 38 (15), 3725-3733, 2022
182022
Are fleas highly modified Mecoptera? Phylogenomic resolution of Antliophora (Insecta: Holometabola)
K Meusemann, M Trautwein, F Friedrich, RG Beutel, BM Wiegmann, ...
BioRxiv, 2020.11. 19.390666, 2020
152020
Data distribution for phylogenetic inference with site repeats via judicious hypergraph partitioning
I Baar, L Hübner, P Oettig, A Zapletal, S Schlag, A Stamatakis, B Morel
2019 IEEE International Parallel and Distributed Processing Symposium …, 2019
62019
A novel heuristic for data distribution in massively parallel phylogenetic inference using site repeats
B Morel, T Flouri, A Stamatakis
2017 IEEE 19th International Conference on High Performance Computing and …, 2017
62017
Asteroid: a new algorithm to infer species trees from gene trees under high proportions of missing data
B Morel, TA Williams, A Stamatakis
Bioinformatics 39 (1), btac832, 2023
52023
Parameter estimation and species tree rooting using ALE and GeneRax
TA Williams, AA Davín, B Morel, LL Szánthó, A Spang, A Stamatakis, ...
Genome Biology and Evolution 15 (7), evad134, 2023
32023
The power and limitations of species tree-aware phylogenetics
TA Williams, AA Davin, B Morel, LL Szánthó, A Spang, A Stamatakis, ...
BioRxiv, 2023.03. 17.533068, 2023
32023
AleRax: A tool for gene and species tree co-estimation and reconciliation under a probabilistic model of gene duplication, transfer, and loss
B Morel, TA Williams, A Stamatakis, GJ Szöllősi
bioRxiv, 2023.10. 06.561091, 2023
12023
AleRax: A tool for species & gene tree co-estimation and reconciliation under a probabilistic model of duplication, transfer, and loss
B Morel, TA Williams, A Stamatakis, GJ Szöllősi
2023
Algorithms, load balancing strategies, and dynamic kernels for large-scale phylogenetic tree inference under Maximum Likelihood
B Morel
2022
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