Ben Raphael
Ben Raphael
Professor of Computer Science, Princeton University
Verified email at princeton.edu - Homepage
Title
Cited by
Cited by
Year
Integrated genomic analyses of ovarian carcinoma
Cancer Genome Atlas Research Network
Nature 474 (7353), 609, 2011
40262011
Mutational landscape and significance across 12 major cancer types
C Kandoth, MD McLellan, F Vandin, K Ye, B Niu, C Lu, M Xie, Q Zhang, ...
Nature 502 (7471), 333-339, 2013
26962013
The cancer genome atlas pan-cancer analysis project
JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ...
Nature genetics 45 (10), 1113, 2013
24852013
Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia
Cancer Genome Atlas Research Network
New England Journal of Medicine 368 (22), 2059-2074, 2013
23422013
Comprehensive molecular characterization of gastric adenocarcinoma
Cancer Genome Atlas Research Network
Nature 513 (7517), 202-209, 2014
22452014
The mutational landscape of lethal castration-resistant prostate cancer
CS Grasso, YM Wu, DR Robinson, X Cao, SM Dhanasekaran, AP Khan, ...
Nature 487 (7406), 239-243, 2012
16622012
International network of cancer genome projects
International Cancer Genome Consortium
Nature 464 (7291), 993, 2010
15352010
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network
Nature 499 (7456), 43, 2013
15072013
Integrated genomic characterization of papillary thyroid carcinoma
N Agrawal, R Akbani, BA Aksoy, A Ally, H Arachchi, SL Asa, JT Auman, ...
Cell 159 (3), 676-690, 2014
11102014
Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin
KA Hoadley, C Yau, DM Wolf, AD Cherniack, D Tamborero, S Ng, ...
Cell 158 (4), 929-944, 2014
9302014
Oceanic Metagenomics: The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ...
PLoS biology 5 (3), 2007
8772007
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes
MDM Leiserson, F Vandin, HT Wu, JR Dobson, JV Eldridge, JL Thomas, ...
Nature genetics 47 (2), 106, 2015
5132015
Integrated genomic characterization of pancreatic ductal adenocarcinoma
BJ Raphael, RH Hruban, AJ Aguirre, RA Moffitt, JJ Yeh, C Stewart, ...
Cancer cell 32 (2), 185-203. e13, 2017
3542017
Algorithms for detecting significantly mutated pathways in cancer
F Vandin, E Upfal, BJ Raphael
Journal of Computational Biology 18 (3), 507-522, 2011
3342011
De novo discovery of mutated driver pathways in cancer
F Vandin, E Upfal, BJ Raphael
Genome research 22 (2), 375-385, 2012
3282012
The mutational landscape of adenoid cystic carcinoma
AS Ho, K Kannan, DM Roy, LGT Morris, I Ganly, N Katabi, D Ramaswami, ...
Nature genetics 45 (7), 791, 2013
2952013
Comprehensive pan-genomic characterization of adrenocortical carcinoma
S Zheng, AD Cherniack, N Dewal, RA Moffitt, L Danilova, BA Murray, ...
Cancer cell 29 (5), 723-736, 2016
2652016
Pathway and network analysis of cancer genomes
P Creixell, J Reimand, S Haider, G Wu, T Shibata, M Vazquez, ...
Nature methods 12 (7), 615, 2015
2272015
Simultaneous identification of multiple driver pathways in cancer
MDM Leiserson, D Blokh, R Sharan, BJ Raphael
PLoS computational biology 9 (5), 2013
1982013
Using positional distribution to identify splicing elements and predict pre-mRNA processing defects in human genes
KH Lim, L Ferraris, ME Filloux, BJ Raphael, WG Fairbrother
Proceedings of the National Academy of Sciences 108 (27), 11093-11098, 2011
1942011
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