A. Murat Eren
A. Murat Eren
Assistant Professor, University of Chicago
Verified email at uchicago.edu - Homepage
Title
Cited by
Cited by
Year
Anvi’o: an advanced analysis and visualization platform for ‘omics data
AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison, ML Sogin, ...
PeerJ 3, e1319, 2015
7802015
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
5952017
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
AM Eren, L Maignien, WJ Sul, LG Murphy, SL Grim, HG Morrison, ...
Methods in Ecology and Evolution 4 (12), 1111-1119, 2013
4982013
Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
AM Eren, HG Morrison, PJ Lescault, J Reveillaud, JH Vineis, ML Sogin
The ISME journal 9 (4), 968-979, 2015
4132015
The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes
I Martínez, JC Stegen, MX Maldonado-Gómez, AM Eren, PM Siba, ...
Cell reports 11 (4), 527-538, 2015
3872015
A filtering method to generate high quality short reads using Illumina paired-end technology
AM Eren, JH Vineis, HG Morrison, ML Sogin
PloS one 8 (6), e66643, 2013
2322013
Oligotyping analysis of the human oral microbiome
AM Eren, GG Borisy, SM Huse, JLM Welch
Proceedings of the National Academy of Sciences 111 (28), E2875-E2884, 2014
2292014
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ...
Nature Microbiology, 1, 2018
2212018
Exploring the diversity of Gardnerella vaginalis in the genitourinary tract microbiota of monogamous couples through subtle nucleotide variation
AM Eren, M Zozaya, CM Taylor, SE Dowd, DH Martin, MJ Ferris
PloS one 6 (10), e26732, 2011
1902011
VAMPS: a website for visualization and analysis of microbial population structures
SM Huse, DBM Welch, A Voorhis, A Shipunova, HG Morrison, AM Eren, ...
BMC bioinformatics 15 (1), 1-7, 2014
1882014
Host-specificity among abundant and rare taxa in the sponge microbiome
J Reveillaud, L Maignien, AM Eren, JA Huber, A Apprill, ML Sogin, ...
The ISME journal, 2014
1882014
Extensive modulation of the fecal metagenome in children with Crohn’s disease during exclusive enteral nutrition
C Quince, UZ Ijaz, N Loman, AM Eren, D Saulnier, J Russell, SJ Haig, ...
The American journal of gastroenterology 110 (12), 1718, 2015
1852015
Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities
L Maignien, EA DeForce, ME Chafee, AM Eren, SL Simmons
MBio 5 (1), e00682-13, 2014
1692014
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
TO Delmont, AM Eren
PeerJ 6, e4320, 2018
1542018
Sewage reflects the microbiomes of human populations
RJ Newton, SL McLellan, DK Dila, JH Vineis, HG Morrison, AM Eren, ...
MBio 6 (2), e02574-14, 2015
1512015
Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes
M Bálint, M Bahram, AM Eren, K Faust, JA Fuhrman, B Lindahl, RB O'hara, ...
FEMS microbiology reviews 40 (5), 686-700, 2016
1412016
Microbial signals drive pre-leukaemic myeloproliferation in a Tet2-deficient host
M Meisel, R Hinterleitner, A Pacis, L Chen, ZM Earley, T Mayassi, ...
Nature 557 (7706), 580-584, 2018
1342018
A single genus in the gut microbiome reflects host preference and specificity
AM Eren, ML Sogin, HG Morrison, JH Vineis, JC Fisher, RJ Newton, ...
The ISME journal 9 (1), 90-100, 2015
1312015
Discovering new indicators of fecal pollution
SL McLellan, AM Eren
Trends in microbiology 22 (12), 697-706, 2014
1172014
Bacterial communities in penile skin, male urethra, and vaginas of heterosexual couples with and without bacterial vaginosis
M Zozaya, MJ Ferris, JD Siren, R Lillis, L Myers, MJ Nsuami, AM Eren, ...
Microbiome 4 (1), 1-10, 2016
1112016
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