Paul Medvedev

Cited by

	All	Since 2016
Citations	3127	1884
h-index	21	19
i10-index	30	26

460

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Co-authors

Rayan ChikhiInstitut Pasteur & CNRSVerified email at ens-cachan.org
Michael BrudnoProfessor of Computer Science, University of Toronto; Director, Chief Data Scientist, UHNVerified email at cs.toronto.edu
Kateryna MakovaProfessor of Biology, Penn State UniversityVerified email at psu.edu
Martin MilaničUniversity of Primorska, Koper, SloveniaVerified email at upr.si
Chen SunComputer Science and Engineering, Pennsylvania State UniversityVerified email at cse.psu.edu
Robert S HarrisAssistant Research Professor, Pennsylvania State UniversityVerified email at bx.psu.edu
Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
Son PhamUCSDVerified email at eng.ucsd.edu
Kristoffer SahlinAssistant Professor at Department of Mathematics, Stockholm UniversityVerified email at math.su.se
Ilia MinkinThe Pennsylvania State UniversityVerified email at psu.edu
Alexandru I. TomescuDepartment of Computer Science, University of HelsinkiVerified email at helsinki.fi
Rahulsimham vegesnaNCIVerified email at nih.gov
Joan BoyarProfessor of Computer Science, University of Southern DenmarkVerified email at imada.sdu.dk
Douglas CavenerPenn State UniversityVerified email at psu.edu
Jens StoyeBielefeld University, Faculty of Technology and Center for Biotechnology (CeBiTec)Verified email at uni-bielefeld.de
Sofya RaskhodnikovaBoston UniversityVerified email at bu.edu
Kamesh MadduriPennsylvania State UniversityVerified email at cse.psu.edu
Jan SchröderPostdoc researcher, Monash UniversityVerified email at monash.edu
Dick de Ridderprofessor bioinformatics, Wageningen University & Research CentreVerified email at wur.nl
Michael DeGiorgioAssociate Professor, Florida Atlantic UniversityVerified email at fau.edu

Paul Medvedev

Penn State

Verified email at cse.psu.edu - Homepage

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Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Computational methods for discovering structural variation with next-generation sequencing P Medvedev, M Stanciu, M Brudno Nature methods 6, S13-S20, 2009	600	2009
Informed and automated k-mer size selection for genome assembly R Chikhi, P Medvedev Bioinformatics 30 (1), 31-37, 2014	487	2014
Detecting copy number variation with mated short reads P Medvedev, M Fiume, M Dzamba, T Smith, M Brudno Genome research 20 (11), 1613-1622, 2010	193	2010
Computability of models for sequence assembly P Medvedev, K Georgiou, G Myers, M Brudno International Workshop on Algorithms in Bioinformatics, 289-301, 2007	185	2007
Computational pan-genomics: status, promises and challenges Computational Pan-Genomics Consortium Briefings in Bioinformatics, bbw089, 2016	159	2016
Error correction of high-throughput sequencing datasets with non-uniform coverage P Medvedev, E Scott, B Kakaradov, P Pevzner Bioinformatics 27 (13), i137-i141, 2011	143	2011
A self-coordinating approach to distributed fair queueing in ad hoc wireless networks H Luo, P Medvedev, J Cheng, S Lu INFOCOM 2001. Twentieth Annual Joint Conference of the IEEE Computer and …, 2001	142	2001
Maximum likelihood genome assembly P Medvedev, M Brudno Journal of computational Biology 16 (8), 1101-1116, 2009	134*	2009
On the representation of de Bruijn graphs R Chikhi, A Limasset, S Jackman, JT Simpson, P Medvedev International Conference on Research in Computational Molecular Biology, 35-55, 2014	115	2014
Complexity of independent set reconfigurability problems M Kamiński, P Medvedev, M Milanič Theoretical computer science 439, 9-15, 2012	105	2012
Compacting de Bruijn graphs from sequencing data quickly and in low memory R Chikhi, A Limasset, P Medvedev Bioinformatics 32 (12), i201-i208, 2016	97	2016
Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers P Medvedev, S Pham, M Chaisson, G Tesler, P Pevzner Journal of Computational Biology 18 (11), 1625-1634, 2011	86	2011
A time-and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y M Tomaszkiewicz, S Rangavittal, M Cechova, RC Sanchez, ... Genome research 26 (4), 530-540, 2016	76	2016
Shortest paths between shortest paths M Kamiński, P Medvedev, M Milanič Theoretical computer science 412 (39), 5205-5210, 2011	66*	2011
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications KD Fungtammasan, Arkarachai and Ananda, Guruprasad and Hile, Suzanne E and ... Genome Research 25, 736--749, 2015	63	2015
Y and W chromosome assemblies: approaches and discoveries M Tomaszkiewicz, P Medvedev, KD Makova Trends in Genetics 33 (4), 266-282, 2017	58	2017
TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes I Minkin, S Pham, P Medvedev Bioinformatics 33 (24), 4024-4032, 2017	51	2017
AllSome Sequence Bloom Trees C Sun, RS Harris, R Chikhi, P Medvedev International Conference on Research in Computational Molecular Biology, 272-286, 2017	40	2017
The relative worst order ratio applied to seat reservation J Boyar, P Medvedev ACM Transactions on Algorithms (TALG) 4 (4), 1-22, 2008	35	2008
Using state machines to model the Ion Torrent sequencing process and to improve read error rates D Golan, P Medvedev Bioinformatics 29 (13), i344-i351, 2013	34	2013

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