| The gut microbiome of healthy Japanese and its microbial and functional uniqueness S Nishijima, W Suda, K Oshima, SW Kim, Y Hirose, H Morita, M Hattori DNA research 23 (2), 125-133, 2016 | 444 | 2016 |
| Circadian oscillations of microbial and functional composition in the human salivary microbiome L Takayasu, W Suda, K Takanashi, E Iioka, R Kurokawa, C Shindo, ... DNA Research 24 (3), 261-270, 2017 | 95 | 2017 |
| Effects of bowel preparation on the human gut microbiome and metabolome N Nagata, M Tohya, S Fukuda, W Suda, S Nishijima, F Takeuchi, ... Scientific reports 9 (1), 4042, 2019 | 94 | 2019 |
| Metagenomic identification of microbial signatures predicting pancreatic cancer from a multinational study N Nagata, S Nishijima, Y Kojima, Y Hisada, K Imbe, T Miyoshi-Akiyama, ... Gastroenterology 163 (1), 222-238, 2022 | 76 | 2022 |
| Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut Y Suzuki, S Nishijima, Y Furuta, J Yoshimura, W Suda, K Oshima, ... Microbiome 7, 1-16, 2019 | 72 | 2019 |
| Population-level metagenomics uncovers distinct effects of multiple medications on the human gut microbiome N Nagata, S Nishijima, T Miyoshi-Akiyama, Y Kojima, M Kimura, R Aoki, ... Gastroenterology 163 (4), 1038-1052, 2022 | 52 | 2022 |
| Nitrogen fixation and nifH diversity in human gut microbiota K Igai, M Itakura, S Nishijima, H Tsurumaru, W Suda, T Tsutaya, ... Scientific reports 6 (1), 31942, 2016 | 45 | 2016 |
| Extensive gut virome variation and its associations with host and environmental factors in a population-level cohort S Nishijima, N Nagata, Y Kiguchi, Y Kojima, T Miyoshi-Akiyama, M Kimura, ... Nature Communications 13 (1), 5252, 2022 | 40 | 2022 |
| Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation S Hosoda, S Nishijima, T Fukunaga, M Hattori, M Hamada Microbiome 8, 1-12, 2020 | 27 | 2020 |
| Effects of storage temperature, storage time, and Cary-Blair transport medium on the stability of the gut microbiota N Nagata, M Tohya, F Takeuchi, W Suda, S Nishijima, M Ohsugi, K Ueki, ... Drug discoveries & therapeutics 13 (5), 256-260, 2019 | 20 | 2019 |
| Long-read metagenomics of multiple displacement amplified DNA of low-biomass human gut phageomes by SACRA pre-processing chimeric reads Y Kiguchi, S Nishijima, N Kumar, M Hattori, W Suda DNA Research 28 (6), dsab019, 2021 | 15 | 2021 |
| Sphingolipids are depleted in alcohol-related liver fibrosis M Thiele, T Suvitaival, K Trošt, M Kim, A de Zawadzki, M Kjaergaard, ... Gastroenterology 164 (7), 1248-1260, 2023 | 8 | 2023 |
| Emergence of the novel aminoglycoside Acetyltransferase variant aac (6′)-Ib-D179Y and Acquisition of Colistin Heteroresistance in Carbapenem-resistant Klebsiella pneumoniae … T Sato, T Wada, S Nishijima, Y Fukushima, C Nakajima, Y Suzuki, ... MBio 11 (6), 10.1128/mbio. 01954-20, 2020 | 8 | 2020 |
| Proactive therapeutic drug monitoring of adalimumab in patients with crohn’s disease K Papamichael, MC Dubinsky, AS Cheifetz Gastroenterology 164 (1), 164-165, 2023 | 4 | 2023 |
| Lipidomics profiling reveals a distinct pattern of selective lipid depletion in the circulation and liver tissue in patients with progressive alcohol-associated liver fibrosis … M Thiele, K Trošt, T Suvitaival, M Kim, M Kjærgaard, S Jacobsen, ... Journal of Hepatology 73 (Suppl 1), S58, 2020 | 4 | 2020 |
| Consistency across multi‐omics layers in a drug‐perturbed gut microbial community S Wuyts, R Alves, M Zimmermann‐Kogadeeva, S Nishijima, S Blasche, ... Molecular Systems Biology 19 (9), e11525, 2023 | 2 | 2023 |
| Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis ‘Somei-yoshino’ across the Japanese archipelago T Ohta, T Kawashima, NO Shinozaki, A Dobashi, S Hiraoka, T Hoshino, ... Journal of plant research 131, 709-717, 2018 | 2 | 2018 |
| Impact of chimera-less long reads on metagenomics of human gut viromes treated with multiple displacement amplification Y Kiguchi, S Nishijima, N Kumar, M Hattori, W Suda | 1 | 2020 |
| Analysis of human microbiome using NGS. W Suda, Y Ogata, S Nishijima Clinical Calcium 28 (9), 1274-1281, 2018 | 1 | 2018 |
| Opportunities and barriers for omics-based biomarker discovery in steatotic liver diseases M Thiele, IF Villesen, L Niu, S Johansen, K Sulek, S Nishijima, ... Journal of Hepatology, 2024 | | 2024 |
