Riccardo Dondi
Title
Cited by
Cited by
Year
The haplotyping problem: an overview of computational models and solutions
P Bonizzoni, G Della Vedova, R Dondi, J Li
Journal of Computer Science and Technology 18 (6), 675-688, 2003
1432003
Reconciling a gene tree to a species tree under the duplication cost model
P Bonizzoni, GD Vedova, R Dondi
Theoretical computer science 347 (1), 36-53, 2005
832005
Stimulating knowledge discovery and sharing
A Agostini, S Albolino, G De Michelis, F De Paoli, R Dondi
Proceedings of the 2003 international ACM SIGGROUP conference on Supporting …, 2003
832003
A novel method for signal transduction network inference from indirect experimental evidence
R Albert, B DasGupta, R Dondi, S Kachalo, E Sontag, A Zelikovsky, ...
Journal of Computational Biology 14 (7), 927-949, 2007
592007
On the approximation of correlation clustering and consensus clustering
P Bonizzoni, G Della Vedova, R Dondi, T Jiang
Journal of Computer and System Sciences 74 (5), 671-696, 2008
422008
Exemplar longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007
402007
HapCol: accurate and memory-efficient haplotype assembly from long reads
Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni
Bioinformatics 32 (11), 1610-1617, 2016
392016
Variants of constrained longest common subsequence
P Bonizzoni, G Della Vedova, R Dondi, Y Pirola
Information Processing Letters 110 (20), 877-881, 2010
352010
Complexity issues in vertex-colored graph pattern matching
R Dondi, G Fertin, S Vialette
Journal of Discrete Algorithms 9 (1), 82-99, 2011
332011
The link between orthology relations and gene trees: a correction perspective
M Lafond, R Dondi, N El-Mabrouk
Algorithms for Molecular Biology 11 (1), 4, 2016
302016
Maximum motif problem in vertex-colored graphs
R Dondi, G Fertin, S Vialette
Annual Symposium on Combinatorial Pattern Matching, 221-235, 2009
292009
Inferring (biological) signal transduction networks via transitive reductions of directed graphs
R Albert, B DasGupta, R Dondi, E Sontag
Algorithmica 51 (2), 129-159, 2008
262008
The binary perfect phylogeny with persistent characters
P Bonizzoni, C Braghin, R Dondi, G Trucco
Theoretical computer science 454, 51-63, 2012
232012
Orthology correction for gene tree reconstruction: Theoretical and experimental results
R Dondi, G Mauri, I Zoppis
Procedia computer science 108, 1115-1124, 2017
212017
On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes
P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria
Journal of Computational Biology 23 (9), 718-736, 2016
212016
Weak pattern matching in colored graphs: Minimizing the number of connected components
R Dondi, G Fertin, S Vialette
Theoretical Computer Science, 27-38, 2007
212007
Finding approximate and constrained motifs in graphs
R Dondi, G Fertin, S Vialette
Annual Symposium on Combinatorial Pattern Matching, 388-401, 2011
202011
On the parameterized complexity of the repetition free longest common subsequence problem
G Blin, P Bonizzoni, R Dondi, F Sikora
Information Processing Letters 112 (7), 272-276, 2012
192012
Reconciling gene trees to a species tree
P Bonizzoni, G Della Vedova, R Dondi
Italian Conference on Algorithms and Complexity, 120-131, 2003
192003
Polytomy refinement for the correction of dubious duplications in gene trees
M Lafond, C Chauve, R Dondi, N El-Mabrouk
Bioinformatics 30 (17), i519-i526, 2014
182014
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Articles 1–20