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Mario Fasold
Mario Fasold
ecSeq Bioinformatics
Verified email at izbi.uni-leipzig.de
Title
Cited by
Cited by
Year
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Nature biotechnology 32 (9), 903-914, 2014
8462014
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
I Braasch, AR Gehrke, JJ Smith, K Kawasaki, T Manousaki, J Pasquier, ...
Nature genetics 48 (4), 427-437, 2016
5762016
Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures
SA Munro, SP Lund, PS Pine, H Binder, DA Clevert, A Conesa, J Dopazo, ...
Nature communications 5 (1), 5125, 2014
1272014
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments
M Fasold, D Langenberger, H Binder, PF Stadler, S Hoffmann
Nucleic acids research 39 (suppl_2), W112-W117, 2011
1132011
Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved
A Nitsche, D Rose, M Fasold, K Reiche, PF Stadler
Rna 21 (5), 801-812, 2015
1002015
Third Report on Chicken Genes and Chromosomes 2015Prepared by
M Schmid, J Smith, DW Burt, BL Aken, PB Antin, AL Archibald, C Ashwell, ...
Cytogenetic and genome research 145 (2), 78-179, 2015
962015
Portraying the expression landscapes of cancer subtypes: A case study of glioblastoma multiforme and prostate cancer
L Hopp, H Wirth, M Fasold, H Binder
Systems Biomedicine 1 (2), 99-121, 2013
422013
Conservation and losses of non-coding RNAs in avian genomes
PP Gardner, M Fasold, SW Burge, M Ninova, J Hertel, S Kehr, TE Steeves, ...
PloS one 10 (3), e0121797, 2015
242015
Estimating RNA-quality using GeneChip microarrays
M Fasold, H Binder
BMC genomics 13, 1-25, 2012
242012
G-stack modulated probe intensities on expression arrays-sequence corrections and signal calibration
M Fasold, PF Stadler, H Binder
BMC bioinformatics 11, 1-24, 2010
242010
plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants
D Patra, M Fasold, D Langenberger, G Steger, I Grosse, PF Stadler
Frontiers in plant science 5, 108103, 2014
222014
Nimodipine enhances neurite outgrowth in dopaminergic brain slice co-cultures
K Sygnecka, C Heine, N Scherf, M Fasold, H Binder, C Scheller, H Franke
International Journal of Developmental Neuroscience 40, 1-11, 2015
212015
AffyRNADegradation: control and correction of RNA quality effects in GeneChip expression data
M Fasold, H Binder
Bioinformatics 29 (1), 129-131, 2013
182013
EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics
A Nunn, SN Can, C Otto, M Fasold, B Díez Rodríguez, N Fernández-Pozo, ...
NAR genomics and bioinformatics 3 (4), lqab106, 2021
132021
Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional Bayesian approaches
A Nunn, C Otto, M Fasold, PF Stadler, D Langenberger
BMC genomics 23 (1), 477, 2022
122022
Variation of RNA quality and quantity are major sources of batch effects in microarray expression data
M Fasold, H Binder
Microarrays 3 (4), 322-339, 2014
122014
Mismatch and G-stack modulated probe signals on SNP microarrays
H Binder, M Fasold, T Glomb
PLoS One 4 (11), e7862, 2009
122009
Molecular phenotypic portraits-Exploring the ‘OMES’with individual resolution
H Binder, L Hopp, V Cakir, M Fasold, M von Bergen, H Wirth
Proceedings of the 6th International Symposium on Health Informatics and …, 2011
92011
Introducing evolutionary biologists to the analysis of big data: guidelines to organize extended bioinformatics training courses
R Faria, D Triant, A Perdomo-Sabogal, B Overduin, C Bleidorn, ...
Evolution: Education and Outreach 11 (1), 1-10, 2018
42018
PORTRAITING HIGH-DIMENSIONAL OMICS DATA WITH INDIVIDUAL RESOLUTION
H Binder, M Fasold, L Hopp, V Cakir, M von Bergen, H Wirth
CAMDA 2011 Proc, 2011
12011
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Articles 1–20