Galip Grkan Yardımcı
Galip Grkan Yardımcı
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Predicting cell-type–specific gene expression from regions of open chromatin
A Natarajan, GG Yardımcı, NC Sheffield, GE Crawford, U Ohler
Genome research 22 (9), 1711-1722, 2012
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
T Yang, F Zhang, GG Yardımcı, F Song, RC Hardison, WS Noble, F Yue, ...
Genome research 27 (11), 1939-1949, 2017
Integrative detection and analysis of structural variation in cancer genomes
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ...
Nature genetics 50 (10), 1388-1398, 2018
Transcriptional control of tissue formation throughout root development
MA Moreno-Risueno, R Sozzani, GG Yardımcı, JJ Petricka, T Vernoux, ...
Science 350 (6259), 426-430, 2015
Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity
AK Tewari, GG Yardimci, Y Shibata, NC Sheffield, L Song, BS Taylor, ...
Genome biology 13 (10), R88, 2012
Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection
GG Yardımcı, CL Frank, GE Crawford, U Ohler
Nucleic acids research 42 (19), 11865-11878, 2014
Software tools for visualizing Hi-C data
GG Yardımcı, WS Noble
Genome biology 18 (1), 26, 2017
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps
KK Yan, GG Yardımcı, C Yan, WS Noble, M Gerstein
Bioinformatics 33 (14), 2199-2201, 2017
Statistical evaluation of the Rodin–Ohno hypothesis: Sense/antisense coding of ancestral Class I and II aminoacyl-tRNA synthetases
SN Chandrasekaran, GG Yardimci, O Erdogan, J Roach, CW Carter Jr
Molecular biology and evolution 30 (7), 1588-1604, 2013
Measuring the reproducibility and quality of Hi-C data
GG Yardımcı, H Ozadam, MEG Sauria, O Ursu, KK Yan, T Yang, ...
Genome biology 20 (1), 1-19, 2019
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory
A Bertero, PA Fields, V Ramani, G Bonora, GG Yardimci, H Reinecke, ...
Nature communications 10 (1), 1-19, 2019
GenomeDISCO: A concordance score for chromosome conformation capture experiments using random walks on contact map graphs
O Ursu, N Boley, M Taranova, YXR Wang, GG Yardimci, W Stafford Noble, ...
Bioinformatics 34 (16), 2701-2707, 2018
Unsupervised embedding of single-cell Hi-C data
L Jie, D Lin, G Yardımcı, Galip, S Noble, William
Bioinformatics 34 (13), i96–i104, 2018
Computational methods for analyzing and modeling genome structure and organization
D Lin, G Bonora, GG Yardımcı, WS Noble
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 11 (1), e1435, 2019
Predictive model of 3D domain formation via CTCF-mediated extrusion
GG Yardımcı, WS Noble
Proceedings of the National Academy of Sciences 112 (47), 14404-14405, 2015
Modified association rule mining approach for the MHC-peptide binding problem
GG Yardımcı, A Kkural, Y Saygın, U Sezerman
International Symposium on Computer and Information Sciences, 165-173, 2006
Capturing cell type-specific chromatin structural patterns by applying topic modeling to single-cell Hi-C data
HJ Kim, GG Yardımcı, G Bonora, V Ramani, J Liu, R Qiu, C Lee, J Hesson, ...
BioRxiv, 534800, 2019
Inferring diploid 3D chromatin structures from Hi-C data
AG Cauer, G Yardimci, JP Vert, N Varoquaux, WS Noble
19th International Workshop on Algorithms in Bioinformatics (WABI 2019), 2019
Tracking Transcription Factors on the Genome by their DNase-seq Footprints
GG Yardimci
Duke University, 2014
Structural alignment using network properties
GG Yardımcı
Il sistema al momento non pu eseguire l'operazione. Riprova pi tardi.
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