Segui
Galip Gürkan Yardımcı
Galip Gürkan Yardımcı
Email verificata su ohsu.edu
Titolo
Citata da
Citata da
Anno
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
11182020
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
T Yang, F Zhang, GG Yardımcı, F Song, RC Hardison, WS Noble, F Yue, ...
Genome research 27 (11), 1939-1949, 2017
3882017
Integrative detection and analysis of structural variation in cancer genomes
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ...
Nature genetics 50 (10), 1388-1398, 2018
3092018
Predicting cell-type–specific gene expression from regions of open chromatin
A Natarajan, GG Yardımcı, NC Sheffield, GE Crawford, U Ohler
Genome research 22 (9), 1711-1722, 2012
2932012
Transcriptional control of tissue formation throughout root development
MA Moreno-Risueno, R Sozzani, GG Yardımcı, JJ Petricka, T Vernoux, ...
Science 350 (6259), 426-430, 2015
1362015
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory
A Bertero, PA Fields, V Ramani, G Bonora, GG Yardimci, H Reinecke, ...
Nature communications 10 (1), 1538, 2019
1222019
Measuring the reproducibility and quality of Hi-C data
GG Yardımcı, H Ozadam, MEG Sauria, O Ursu, KK Yan, T Yang, ...
Genome biology 20, 1-19, 2019
972019
GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs
O Ursu, N Boley, M Taranova, YXR Wang, GG Yardimci, W Stafford Noble, ...
Bioinformatics 34 (16), 2701-2707, 2018
912018
Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity
AK Tewari, GG Yardimci, Y Shibata, NC Sheffield, L Song, BS Taylor, ...
Genome biology 13, 1-17, 2012
912012
Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection
GG Yardımcı, CL Frank, GE Crawford, U Ohler
Nucleic acids research 42 (19), 11865-11878, 2014
882014
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps
KK Yan, GG Yardımcı, C Yan, WS Noble, M Gerstein
Bioinformatics 33 (14), 2199-2201, 2017
832017
Measuring the reproducibility and quality of Hi-C data
GG Yardimci, H Ozadam, BR Lajoie, Y Zhan, J Dekker, WS Noble
822019
Software tools for visualizing Hi-C data
GG Yardımcı, WS Noble
Genome biology 18, 1-9, 2017
682017
Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data
HJ Kim, GG Yardımcı, G Bonora, V Ramani, J Liu, R Qiu, C Lee, J Hesson, ...
PLoS computational biology 16 (9), e1008173, 2020
672020
Unsupervised embedding of single-cell Hi-C data
L Jie, D Lin, G Yardımcı, Galip, S Noble, William
Bioinformatics 34 (13), i96–i104, 2018
602018
Statistical evaluation of the Rodin–Ohno hypothesis: Sense/antisense coding of ancestral Class I and II aminoacyl-tRNA synthetases
SN Chandrasekaran, GG Yardimci, O Erdogan, J Roach, CW Carter Jr
Molecular Biology and Evolution 30 (7), 1588-1604, 2013
502013
High-content single-cell combinatorial indexing
RM Mulqueen, D Pokholok, BL O’Connell, CA Thornton, F Zhang, ...
Nature biotechnology 39 (12), 1574-1580, 2021
462021
Computational methods for analyzing and modeling genome structure and organization
D Lin, G Bonora, GG Yardımcı, WS Noble
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 11 (1), e1435, 2019
342019
Massively parallel characterization of transcriptional regulatory elements in three diverse human cell types
V Agarwal, F Inoue, M Schubach, BK Martin, PM Dash, Z Zhang, A Sohota, ...
bioRxiv, 2023
182023
Inferring diploid 3D chromatin structures from Hi-C data
AG Cauer, G Yardimci, JP Vert, N Varoquaux, WS Noble
BioRxiv, 644294, 2019
172019
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
Articoli 1–20