|Structural repertoire of HIV-1-neutralizing antibodies targeting the CD4 supersite in 14 donors|
T Zhou, RM Lynch, L Chen, P Acharya, X Wu, NA Doria-Rose, MG Joyce, ...
Cell 161 (6), 1280-1292, 2015
|Origins of specificity and affinity in antibody–protein interactions|
HP Peng, KH Lee, JW Jian, AS Yang
Proceedings of the National Academy of Sciences 111 (26), E2656-E2665, 2014
|Rationalization and design of the complementarity determining region sequences in an antibody-antigen recognition interface|
CM Yu, HP Peng, IC Chen, YC Lee, JB Chen, KC Tsai, CT Chen, ...
PLoS One 7 (3), e33340, 2012
|Modeling protein loops with knowledge-based prediction of sequence-structure alignment|
HP Peng, AS Yang
Bioinformatics 23 (21), 2836-2842, 2007
|Amino acid substitutions of MagA in Klebsiella pneumoniae affect the biosynthesis of the capsular polysaccharide|
TL Lin, FL Yang, AS Yang, HP Peng, TL Li, MD Tsai, SH Wu, JT Wang
PLoS One 7 (10), 2012
|Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces|
CT Chen, HP Peng, JW Jian, KC Tsai, JY Chang, EW Yang, JB Chen, ...
PloS one 7 (6), 2012
|Assessing computational amino acid β-turn propensities with a phage-displayed combinatorial library and directed evolution|
HJ Hsu, HJ Chang, HP Peng, SS Huang, MY Lin, AS Yang
Structure 14 (10), 1499-1510, 2006
|Prediction of carbohydrate binding sites on protein surfaces with 3-dimensional probability density distributions of interacting atoms|
KC Tsai, JW Jian, EW Yang, PC Hsu, HP Peng, CT Chen, JB Chen, ...
PLoS One 7 (7), 2012
|Loop-Sequence Features and Stability Determinants in Antibody Variable Domains by High-Throughput Experiments|
HJ Chang, JW Jian, HJ Hsu, YC Lee, HS Chen, JJ You, SC Hou, CY Shao, ...
Structure 22 (1), 9-21, 2014
|Structure‐Based Design and Synthesis of Highly Potent SARS‐CoV 3CL Protease Inhibitors|
YM Shao, WB Yang, HP Peng, MF Hsu, KC Tsai, TH Kuo, AHJ Wang, ...
ChemBioChem 8 (14), 1654-1657, 2007
|Molecular evolution of cystine-stabilized miniproteins as stable proteinaceous binders|
HJ Chang, HJ Hsu, C Chang, HP Peng, YK Sun, HM Yu, HC Shih, ...
Structure 17 (4), 620-631, 2009
|Antibody variable domain interface and framework sequence requirements for stability and function by high-throughput experiments|
HJ Hsu, KH Lee, JW Jian, HJ Chang, CM Yu, YC Lee, C Chen, HP Peng, ...
Structure 22 (1), 22-34, 2014
|Germline breast cancer susceptibility gene mutations and breast cancer outcomes|
YA Wang, JW Jian, CF Hung, HP Peng, CF Yang, HCS Cheng, AS Yang
BMC cancer 18 (1), 315, 2018
|Discovering neutralizing antibodies targeting the stem epitope of H1N1 influenza hemagglutinin with synthetic phage-displayed antibody libraries|
CP Tung, C Chen, CM Yu, HP Peng, JW Jian, SH Ma, YC Lee, JT Jan, ...
Scientific reports 5 (1), 1-16, 2015
|Predominant structural configuration of natural antibody repertoires enables potent antibody responses against protein antigens|
HS Chen, SC Hou, JW Jian, KS Goh, ST Shen, YC Lee, JJ You, HP Peng, ...
Scientific reports 5, 12411, 2015
|Prediction of FMN-binding residues with three-dimensional probability distributions of interacting atoms on protein surfaces|
R Mahalingam, HP Peng, AS Yang
Journal of theoretical biology 343, 154-161, 2014
|Predicting ligand binding sites on protein surfaces by 3-dimensional probability density distributions of interacting atoms|
JW Jian, P Elumalai, T Pitti, CY Wu, KC Tsai, JY Chang, HP Peng, ...
PloS one 11 (8), 2016
|Prediction of fatty acid-binding residues on protein surfaces with three-dimensional probability distributions of interacting atoms|
R Mahalingam, HP Peng, AS Yang
Biophysical chemistry 192, 10-19, 2014
|Antibody-drug conjugates with HER2-targeting antibodies from synthetic antibody libraries are highly potent against HER2-positive human gastric tumor in xenograft models|
WY Kuo, HJ Hsu, CY Wu, HS Chen, YC Chou, YL Tsou, HP Peng, ...
mAbs 11 (1), 153-165, 2019
|Evaluating BRCA mutation risk predictive models in a Chinese cohort in Taiwan|
FH Hung, YA Wang, JW Jian, HP Peng, LL Hsieh, CF Hung, MM Yang, ...
Scientific reports 9 (1), 1-10, 2019