Pavel Tomancak
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Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nature methods 9 (7), 676-682, 2012
Globally optimal stitching of tiled 3D microscopic image acquisitions
S Preibisch, S Saalfeld, P Tomancak
Bioinformatics 25 (11), 1463-1465, 2009
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
E Lécuyer, H Yoshida, N Parthasarathy, C Alm, T Babak, T Cerovina, ...
Cell 131 (1), 174-187, 2007
Content-aware image restoration: pushing the limits of fluorescence microscopy
M Weigert, U Schmidt, T Boothe, A Müller, A Dibrov, A Jain, B Wilhelm, ...
Nature methods 15 (12), 1090-1097, 2018
Computational identification of DrosophilamicroRNA genes
EC Lai, P Tomancak, RW Williams, GM Rubin
Genome biology 4, 1-20, 2003
TrakEM2 software for neural circuit reconstruction
A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ...
PloS one 7 (6), e38011, 2012
RNA buffers the phase separation behavior of prion-like RNA binding proteins
S Maharana, J Wang, DK Papadopoulos, D Richter, A Pozniakovsky, ...
Science 360 (6391), 918-921, 2018
Systematic determination of patterns of gene expression during Drosophila embryogenesis
P Tomancak, A Beaton, R Weiszmann, E Kwan, SQ Shu, SE Lewis, ...
Genome biology 3, 1-14, 2002
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, ...
Proceedings of the National Academy of Sciences 99 (2), 757-762, 2002
Biological imaging software tools
KW Eliceiri, MR Berthold, IG Goldberg, L Ibáńez, BS Manjunath, ...
Nature methods 9 (7), 697-710, 2012
An objective comparison of cell-tracking algorithms
V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ...
Nature methods 14 (12), 1141-1152, 2017
Global analysis of patterns of gene expression during Drosophilaembryogenesis
P Tomancak, BP Berman, A Beaton, R Weiszmann, E Kwan, ...
Genome biology 8, 1-24, 2007
Tissue clearing and its applications in neuroscience
HR Ueda, A Ertürk, K Chung, V Gradinaru, A Chédotal, P Tomancak, ...
Nature Reviews Neuroscience 21 (2), 61-79, 2020
Gene expression divergence recapitulates the developmental hourglass model
AT Kalinka, KM Varga, DT Gerrard, S Preibisch, DL Corcoran, J Jarrells, ...
Nature 468 (7325), 811-814, 2010
Software for bead-based registration of selective plane illumination microscopy data
S Preibisch, S Saalfeld, J Schindelin, P Tomancak
Nature methods 7 (6), 418-419, 2010
An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy
A Cardona, S Saalfeld, S Preibisch, B Schmid, A Cheng, J Pulokas, ...
PLoS biology 8 (10), e1000502, 2010
Assessing phototoxicity in live fluorescence imaging
PP Laissue, RA Alghamdi, P Tomancak, EG Reynaud, H Shroff
Nature methods 14 (7), 657-661, 2017
CATMAID: collaborative annotation toolkit for massive amounts of image data
S Saalfeld, A Cardona, V Hartenstein, P Tomančák
Bioinformatics 25 (15), 1984-1986, 2009
OpenSPIM: an open-access light-sheet microscopy platform
PG Pitrone, J Schindelin, L Stuyvenberg, S Preibisch, M Weber, ...
Nature methods 10 (7), 598-599, 2013
A genome-wide resource for the analysis of protein localisation in Drosophila
M Sarov, C Barz, H Jambor, MY Hein, C Schmied, D Suchold, B Stender, ...
elife 5, e12068, 2016
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