|The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements|
L Shi, LH Reid, WD Jones, R Shippy, JA Warrington, SC Baker, PJ Collins, ...
Nature biotechnology 24 (9), 1151, 2006
|The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models|
Nature biotechnology 28 (8), 827, 2010
|A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium|
Nature Biotechnology 32 (9), 903–914, 2014
|Study of 202 natural, synthetic, and environmental chemicals for binding to the androgen receptor|
H Fang, W Tong, WS Branham, CL Moland, SL Dial, H Hong, Q Xie, ...
Chemical research in toxicology 16 (10), 1338-1358, 2003
|Coumarin-Based Inhibitors of HIV Integrase|
H Zhao, N Neamati, H Hong, A Mazumder, S Wang, S Sunder, GWA Milne, ...
Journal of medicinal chemistry 40 (2), 242-249, 1997
|The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance|
C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ...
Nature biotechnology 32 (9), 926-932, 2014
|Depsides and depsidones as inhibitors of HIV-1 integrase: discovery of novel inhibitors through 3D database searching|
N Neamati, H Hong, A Mazumder, S Wang, S Sunder, MC Nicklaus, ...
Journal of medicinal chemistry 40 (6), 942-951, 1997
|A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data|
J Luo, M Schumacher, A Scherer, D Sanoudou, D Megherbi, T Davison, ...
The pharmacogenomics journal 10 (4), 278-291, 2010
|Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential|
L Shi, W Tong, H Fang, U Scherf, J Han, RK Puri, FW Frueh, FM Goodsaid, ...
BMC bioinformatics 6 (S2), S12, 2005
|ArrayTrack--supporting toxicogenomic research at the US Food and Drug Administration National Center for Toxicological Research.|
W Tong, X Cao, S Harris, H Sun, H Fang, J Fuscoe, A Harris, H Hong, ...
Environmental health perspectives 111 (15), 1819-1826, 2003
|The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies|
L Shi, WD Jones, RV Jensen, SC Harris, RG Perkins, FM Goodsaid, ...
BMC bioinformatics 9 (9), 1-19, 2008
|Decision forest: combining the predictions of multiple independent decision tree models|
W Tong, H Hong, H Fang, Q Xie, R Perkins
Journal of Chemical Information and Computer Sciences 43 (2), 525-531, 2003
|A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages|
Y Yu, JC Fuscoe, C Zhao, C Guo, M Jia, T Qing, DI Bannon, L Lancashire, ...
Nature communications 5 (1), 1-11, 2014
|Comparison of RNA-seq and microarray-based models for clinical endpoint prediction|
W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ...
Genome biology 16 (1), 1-12, 2015
|HIV-1 integrase pharmacophore: discovery of inhibitors through three-dimensional database searching|
MC Nicklaus, N Neamati, H Hong, A Mazumder, S Sunder, J Chen, ...
Journal of medicinal chemistry 40 (6), 920-929, 1997
|Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics|
H Hong, Q Xie, W Ge, F Qian, H Fang, L Shi, Z Su, R Perkins, W Tong
Journal of chemical information and modeling 48 (7), 1337-1344, 2008
|Next-generation sequencing and its applications in molecular diagnostics|
Z Su, B Ning, H Fang, H Hong, R Perkins, W Tong, L Shi
Expert review of molecular diagnostics 11 (3), 333-343, 2011
|CERAPP: collaborative estrogen receptor activity prediction project|
K Mansouri, A Abdelaziz, A Rybacka, A Roncaglioni, A Tropsha, A Varnek, ...
Environmental health perspectives 124 (7), 1023-1033, 2016
|Prediction of estrogen receptor binding for 58,000 chemicals using an integrated system of a tree-based model with structural alerts.|
H Hong, W Tong, H Fang, L Shi, Q Xie, J Wu, R Perkins, JD Walker, ...
Environmental Health Perspectives 110 (1), 29-36, 2002
|Assessment of prediction confidence and domain extrapolation of two structure–activity relationship models for predicting estrogen receptor binding activity|
W Tong, Q Xie, H Hong, L Shi, H Fang, R Perkins
Environmental health perspectives 112 (12), 1249-1254, 2004