Leonard A. Harris
Leonard A. Harris
University of Arkansas, Department of Biomedical Engineering
Verified email at cornell.edu
Cited by
Cited by
Molecular Chemisorption as the Theoretically Preferred Pathway for Water Adsorption on Ideal Rutile T i O 2 (110)
LA Harris, AA Quong
Physical review letters 93 (8), 086105, 2004
Statistical model checking in biolab: Applications to the automated analysis of t-cell receptor signaling pathway
EM Clarke, JR Faeder, CJ Langmead, LA Harris, SK Jha, A Legay
International Conference on Computational Methods in Systems Biology, 231-250, 2008
BioNetGen 2.2: advances in rule-based modeling
LA Harris, JS Hogg, JJ Tapia, JAP Sekar, S Gupta, I Korsunsky, A Arora, ...
Bioinformatics 32 (21), 3366-3368, 2016
Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems
LA Chylek, LA Harris, CS Tung, JR Faeder, CF Lopez, WS Hlavacek
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (1), 13-36, 2014
A “partitioned leaping” approach for multiscale modeling of chemical reaction dynamics
LA Harris, P Clancy
The Journal of chemical physics 125 (14), 144107, 2006
An unbiased metric of antiproliferative drug effect in vitro
LA Harris, PL Frick, SP Garbett, KN Hardeman, BB Paudel, CF Lopez, ...
Nature methods 13 (6), 497-500, 2016
Modeling for (physical) biologists: an introduction to the rule-based approach
LA Chylek, LA Harris, JR Faeder, WS Hlavacek
Physical biology 12 (4), 045007, 2015
Compartmental rule-based modeling of biochemical systems
LA Harris, JS Hogg, JR Faeder
Proceedings of the 2009 Winter Simulation Conference (WSC), 908-919, 2009
Exact hybrid particle/population simulation of rule-based models of biochemical systems
JS Hogg, LA Harris, LJ Stover, NS Nair, JR Faeder
PLoS Comput Biol 10 (4), e1003544, 2014
Quantifying drug combination synergy along potency and efficacy axes
CT Meyer, DJ Wooten, BB Paudel, J Bauer, KN Hardeman, D Westover, ...
Cell systems 8 (2), 97-108. e16, 2019
Accurate implementation of leaping in space: The spatial partitioned-leaping algorithm
KA Iyengar, LA Harris, P Clancy
The Journal of chemical physics 132 (9), 094101, 2010
Harris and quong reply
LA Harris, AA Quong
Physical Review Letters 95 (2), 029602, 2005
Harris and quong reply
LA Harris, AA Quong
Physical Review Letters 95 (2), 029602, 2005
MOSBIE: a tool for comparison and analysis of rule-based biochemical models
JE Wenskovitch, LA Harris, JJ Tapia, JR Faeder, GE Marai
BMC bioinformatics 15 (1), 1-16, 2014
Quantifying stochastic effects in biochemical reaction networks using partitioned leaping
LA Harris, AM Piccirilli, ER Majusiak, P Clancy
Physical Review E 79 (5), 051906, 2009
A Nonquiescent “Idling” Population State in Drug-Treated, BRAF-Mutated Melanoma
BB Paudel, LA Harris, KN Hardeman, AA Abugable, CE Hayford, ...
Biophysical journal 114 (6), 1499-1511, 2018
Activated oncogenic pathway modifies Iron network in breast epithelial cells: a dynamic modeling perspective
J Chifman, S Arat, Z Deng, E Lemler, JC Pino, LA Harris, MA Kochen, ...
PLoS computational biology 13 (2), e1005352, 2017
GPU-powered model analysis with PySB/cupSODA
LA Harris, MS Nobile, JC Pino, ALR Lubbock, D Besozzi, G Mauri, ...
Bioinformatics 33 (21), 3492-3494, 2017
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular Systems Biology 16 (8), e9110, 2020
Modeling heterogeneous tumor growth dynamics and cell–cell interactions at single-cell and cell-population resolution
LA Harris, S Beik, PMM Ozawa, L Jimenez, AM Weaver
Current Opinion in Systems Biology 17, 24-34, 2019
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