| Assessing key decisions for transcriptomic data integration in biochemical networks A Richelle, C Joshi, NE Lewis PLoS computational biology 15 (7), e1007185, 2019 | 68 | 2019 |
| What are housekeeping genes? CJ Joshi, W Ke, A Drangowska-Way, EJ O’Rourke, NE Lewis PLoS computational biology 18 (7), e1010295, 2022 | 48 | 2022 |
| Dietary serine-microbiota interaction enhances chemotherapeutic toxicity without altering drug conversion W Ke, JA Saba, CH Yao, MA Hilzendeger, A Drangowska-Way, C Joshi, ... Nature communications 11 (1), 2587, 2020 | 36 | 2020 |
| Modeling Meets Metabolomics—The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism Caenorhabditis elegans M Witting, J Hastings, N Rodriguez, CJ Joshi, JPN Hattwell, PR Ebert, ... Frontiers in molecular biosciences 5, 96, 2018 | 36 | 2018 |
| Model-based assessment of mammalian cell metabolic functionalities using omics data A Richelle, BP Kellman, AT Wenzel, AWT Chiang, T Reagan, ... Cell reports methods 1 (3), 2021 | 30* | 2021 |
| Inferring a spatial code of cell-cell interactions across a whole animal body E Armingol, A Ghaddar, CJ Joshi, H Baghdassarian, I Shamie, J Chan, ... PLoS computational biology 18 (11), e1010715, 2022 | 28 | 2022 |
| StanDep: Capturing transcriptomic variability improves context-specific metabolic models CJ Joshi, SM Schinn, A Richelle, I Shamie, EJ O’Rourke, NE Lewis PLoS computational biology 16 (5), e1007764, 2020 | 27 | 2020 |
| Modeling and analysis of flux distribution and bioproduct formation in Synechocystis sp. PCC 6803 using a new genome-scale metabolic reconstruction CJ Joshi, CAM Peebles, A Prasad Algal Research 27, 295 - 310, 2017 | 23 | 2017 |
| A metabolic CRISPR-Cas9 screen in Chinese hamster ovary cells identifies glutamine-sensitive genes KJ la Cour Karottki, H Hefzi, S Li, LE Pedersen, PN Spahn, C Joshi, ... Metabolic engineering 66, 114-122, 2021 | 20 | 2021 |
| WormJam: A consensus C. elegans Metabolic Reconstruction and Metabolomics Community and Workshop Series J Hastings, A Mains, M Artal-Sanz, S Bergmann, BP Braeckman, J Bundy, ... Worm 6 (2), e1373939, 2017 | 17 | 2017 |
| Epistatic interactions among metabolic genes depend upon environmental conditions CJ Joshi, A Prasad Molecular BioSystems 10 (10), 2578-2589, 2014 | 16 | 2014 |
| Palladium-Catalyzed Decarboxylative N-3-ortho-C–H Acylation of 1, 4-Disubstituted 1, 2, 3-Triazoles with α-Oxocarboxylic Acids X Ma, H Huang, J Yang, X Feng, K Xie Synthesis 50 (13), 2567-2576, 2018 | 11 | 2018 |
| Guidelines for extracting biologically relevant context-specific metabolic models using gene expression data S Gopalakrishnan, CJ Joshi, MÁ Valderrama-Gómez, E Icten, P Rolandi, ... Metabolic Engineering 75, 181-191, 2023 | 8 | 2023 |
| Adaption of Generic Metabolic Models to Specific Cell Lines for Improved Modeling of Biopharmaceutical Production and Prediction of Processes C Cyrielle, C Joshi, NE Lewis, M Laetitia, MR Andersen Cell Culture Engineering: Recombinant Protein Production, 127-162, 2019 | 1 | 2019 |
| StanDep: Capturing transcriptomic variability improves context-specific metabolic models (vol 16, e1007764, 2020) CJ Joshi, SM Schinn, A Richelle, I Shamie, EJ O'Rourke, NE Lewis PLOS COMPUTATIONAL BIOLOGY 18 (1), 2020 | | 2020 |
| Genome-scale metabolic modeling of cyanobacteria: Network structure, interactions, reconstruction and dynamics CJ Joshi, P Christie, A Prasad q-bio, 2015 | | 2015 |
| Genome scale metabolic network reconstruction of Synechocystis sp PCC6803 taking into account molecular mechanisms under photoautotrophic conditions C Joshi, F Estep, M Tracey, C Peebles, A Prasad ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 249, 2015 | | 2015 |
| Structure and Role of Enzyme-Reaction Association in Microbial Metabolism CJ Joshi, A Prasad COBRA, 2014 | | 2014 |
| Comparison of Resilience against Genetic Perturbations in Microbial Metabolism C Joshi, A Prasad Biophysical Journal 104 (2), 162a, 2013 | | 2013 |
| 162a Sunday, February 3, 2013 C Joshi, A Prasad | | |
