| The pathway ontology–updates and applications V Petri, P Jayaraman, M Tutaj, GT Hayman, JR Smith, J De Pons, ... Journal of biomedical semantics 5, 1-12, 2014 | 108 | 2014 |
| A computational genomics pipeline for prokaryotic sequencing projects AO Kislyuk, LS Katz, S Agrawal, MS Hagen, AB Conley, P Jayaraman, ... Bioinformatics 26 (15), 1819-1826, 2010 | 79 | 2010 |
| InterMOD: integrated data and tools for the unification of model organism research J Sullivan, K Karra, SAT Moxon, A Vallejos, H Motenko, JD Wong, ... Scientific reports 3 (1), 1802, 2013 | 41 | 2013 |
| AUDIOME: a tiered exome sequencing–based comprehensive gene panel for the diagnosis of heterogeneous nonsyndromic sensorineural hearing loss Q Guan, J Balciuniene, K Cao, Z Fan, S Biswas, A Wilkens, DJ Gallo, ... Genetics in Medicine 20 (12), 1600-1608, 2018 | 36 | 2018 |
| Rat Genome Database: a unique resource for rat, human, and mouse quantitative trait locus data R Nigam, SJF Laulederkind, GT Hayman, JR Smith, SJ Wang, TF Lowry, ... Physiological genomics 45 (18), 809-816, 2013 | 28 | 2013 |
| Rapid and accurate interpretation of clinical exomes using Phenoxome: a computational phenotype-driven approach C Wu, B Devkota, P Evans, X Zhao, SW Baker, R Niazi, K Cao, ... European Journal of Human Genetics 27 (4), 612-620, 2019 | 23 | 2019 |
| Accurate long-read sequencing allows assembly of the duplicated RHD and RHCE genes harboring variants relevant to blood transfusion Z Zhang, HH An, S Vege, T Hu, S Zhang, T Mosbruger, P Jayaraman, ... The American Journal of Human Genetics 109 (1), 180-191, 2022 | 17 | 2022 |
| Neisseria Base: a comparative genomics database for Neisseria meningitidis LS Katz, JC Humphrey, AB Conley, V Nelakuditi, AO Kislyuk, S Agrawal, ... Database 2011, bar035, 2011 | 14 | 2011 |
| Implications of the use of artificial intelligence predictive models in health care settings: A simulation study A Vaid, A Sawant, M Suarez-Farinas, J Lee, S Kaul, P Kovatch, ... Annals of Internal Medicine 176 (10), 1358-1369, 2023 | 13 | 2023 |
| Improved rat genome gene prediction by integration of ESTs with RNA-Seq information L Li, E Chen, C Yang, J Zhu, P Jayaraman, J De Pons, CC Kaczorowski, ... Bioinformatics 31 (1), 25-32, 2015 | 11 | 2015 |
| Proteomic characterization of acute kidney injury in patients hospitalized with SARS-CoV2 infection I Paranjpe, P Jayaraman, CY Su, S Zhou, S Chen, R Thompson, ... Communications Medicine 3 (1), 81, 2023 | 10 | 2023 |
| The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information GT Hayman, P Jayaraman, V Petri, M Tutaj, W Liu, J De Pons, MR Dwinell, ... Human Genomics 7, 1-7, 2013 | 9 | 2013 |
| Molecular diagnostic outcomes from 700 cases: What can we learn from a retrospective analysis of clinical exome sequencing? JR Murrell, AMI Nesbitt, SW Baker, KB Pechter, J Balciuniene, X Zhao, ... The Journal of Molecular Diagnostics 24 (3), 274-286, 2022 | 8 | 2022 |
| Using sequence clustering to identify clinically relevant subphenotypes in patients with COVID-19 admitted to the intensive care unit W Oh, P Jayaraman, AS Sawant, L Chan, MA Levin, AW Charney, ... Journal of the American Medical Informatics Association 29 (3), 489-499, 2022 | 5 | 2022 |
| AnthOligo: automating the design of oligonucleotides for capture/enrichment technologies P Jayaraman, T Mosbruger, T Hu, NG Tairis, C Wu, PM Clark, M D’Arcy, ... Bioinformatics 36 (15), 4353-4356, 2020 | 4 | 2020 |
| A primer in precision nephrology: optimizing outcomes in kidney health and disease through data-driven medicine P Jayaraman, A Crouse, G Nadkarni, M Might Kidney360 4 (4), e544-e554, 2023 | 2 | 2023 |
| Evolution of a clinical exome sequencing bioinformatics pipeline in pediatrics: improvements, validation, challenges C Wu, K Cao, P Jayaraman, LK Conlin, M Luo, MC Duhk, Z Yu, ... JOURNAL OF MOLECULAR DIAGNOSTICS 18 (6), 993-993, 2016 | 1 | 2016 |
| A computational genomics pipeline for microbial sequencing projects AO Kislyuk, LS Katz, S Agrawal, MS Hagen, AB Conley, P Jayaraman, ... | 1 | 2005 |
| A novel method leveraging time series data to improve subphenotyping and application in critically ill patients with COVID-19 W Oh, P Jayaraman, P Tandon, US Chaddha, P Kovatch, AW Charney, ... Artificial Intelligence in Medicine 148, 102750, 2024 | | 2024 |
| Integrated multiomics implicates dysregulation of ECM and cell adhesion pathways as drivers of severe COVID-associated kidney injury N Anandakrishnan, Z Yi, Z Sun, T Liu, J Haydak, S Eddy, P Jayaraman, ... medRxiv, 2024.03. 18.24304401, 2024 | | 2024 |
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