Qian Zhu
Qian Zhu
Postdoctoral fellow, Department of Data Sciences, Dana-Farber Cancer Institute
Verified email at jimmy.harvard.edu - Homepage
Cited by
Cited by
Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+
CHL Eng, M Lawson, Q Zhu, R Dries, N Koulena, Y Takei, J Yun, ...
Nature 568 (7751), 235-239, 2019
Defining cell-type specificity at the transcriptional level in human disease
W Ju, CS Greene, F Eichinger, V Nair, JB Hodgin, M Bitzer, Y Lee, Q Zhu, ...
Genome research 23 (11), 1862-1873, 2013
The collapse of gene complement following whole genome duplication
D Sankoff, C Zheng, Q Zhu
BMC genomics 11 (1), 313, 2010
Direct promoter repression by BCL11A controls the fetal to adult hemoglobin switch
N Liu*, VV Hargreaves*, Q Zhu*, JV Kurland, J Hong, W Kim, F Sher, ...
Cell 173 (2), 430-442. e17, 2018
Targeted exploration and analysis of large cross-platform human transcriptomic compendia
Q Zhu, AK Wong, A Krishnan, MR Aure, A Tadych, R Zhang, DC Corney, ...
Nature methods 12 (3), 211-214, 2015
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors
MR Aure, SK Leivonen, T Fleischer, Q Zhu, J Overgaard, J Alsner, ...
Genome biology 14 (11), R126, 2013
IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment
C Nirschl, M Suraez-Farinas, B Izar, S Prakadan, R Dannenfelser, I Tirosh, ...
Cell 170 (1), 127-141, 2017
Scaffold filling, contig fusion and comparative gene order inference
A Muņoz, C Zheng, Q Zhu, VA Albert, S Rounsley, D Sankoff
BMC bioinformatics 11 (1), 304, 2010
Algorithms for the extraction of synteny blocks from comparative maps
V Choi, C Zheng, Q Zhu, D Sankoff
International Workshop on Algorithms in Bioinformatics, 277-288, 2007
Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes
C Zheng, Q Zhu, Z Adam, D Sankoff
Bioinformatics 24 (13), i96-i104, 2008
Removing noise and ambiguities from comparative maps in rearrangement analysis
C Zheng, Q Zhu, D Sankoff
IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 515-522, 2007
Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data
Q Zhu, S Shah, R Dries, L Cai, GC Yuan
Nature biotechnology 36 (12), 1183, 2018
Genome halving with an outgroup
C Zheng, Q Zhu, D Sankoff
Evolutionary Bioinformatics 2, 117693430600200028, 2006
Generalized gene adjacencies, graph bandwidth, and clusters in yeast evolution
Q Zhu, Z Adam, V Choi, D Sankoff
IEEE/ACM transactions on computational biology and bioinformatics 6 (2), 213-220, 2008
Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies
Y Lee, A Krishnan, Q Zhu, OG Troyanskaya
Bioinformatics 29 (23), 3036-3044, 2013
Polyploids, genome halving and phylogeny
D Sankoff, C Zheng, Q Zhu
Bioinformatics 23 (13), i433-i439, 2007
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
HuBMAP Consortium
Nature 574 (7777), 187, 2019
Revealing the critical regulators of cell identity in the mouse cell atlas
S Suo, Q Zhu, A Saadatpour, L Fei, G Guo, GC Yuan
Cell reports 25 (6), 1436-1445. e3, 2018
Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms
CY Park, A Krishnan, Q Zhu, AK Wong, YS Lee, OG Troyanskaya
Bioinformatics 31 (7), 1093-1101, 2015
Descendants of whole genome duplication within gene order phylogeny
C Zheng, Q Zhu, D Sankoff
Journal of Computational Biology 15 (8), 947-964, 2008
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