| Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila SV Ulianov, SA Doronin, EE Khrameeva, PI Kos, AV Luzhin, SS Starikov, ... Nature communications 10 (1), 1176, 2019 | 101 | 2019 |
| Spatial organization of transcribed eukaryotic genes S Leidescher, J Ribisel, S Ullrich, Y Feodorova, E Hildebrand, A Galitsyna, ... Nature cell biology 24 (3), 327-339, 2022 | 68 | 2022 |
| Order and stochasticity in the folding of individual Drosophila genomes SV Ulianov, VV Zakharova, AA Galitsyna, PI Kos, KE Polovnikov, ... Nature communications 12 (1), 41, 2021 | 51 | 2021 |
| Studying RNA–DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics AA Gavrilov, AA Zharikova, AA Galitsyna, AV Luzhin, NM Rubanova, ... Nucleic Acids Research 48 (12), 6699-6714, 2020 | 36 | 2020 |
| A machine learning framework for the prediction of chromatin folding in Drosophila using epigenetic features MB Rozenwald, AA Galitsyna, GV Sapunov, EE Khrameeva, MS Gelfand PeerJ Computer Science 6, e307, 2020 | 33 | 2020 |
| Cooltools: enabling high-resolution Hi-C analysis in Python Open2C, N Abdennur, S Abraham, G Fudenberg, IM Flyamer, ... BioRxiv, 2022.10. 31.514564, 2022 | 31 | 2022 |
| Single-cell Hi-C data analysis: safety in numbers AA Galitsyna, MS Gelfand Briefings in bioinformatics 22 (6), bbab316, 2021 | 31 | 2021 |
| Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure SV Ulianov, AA Galitsyna, IM Flyamer, AK Golov, EE Khrameeva, ... Epigenetics & Chromatin 10, 1-19, 2017 | 25 | 2017 |
| Pairtools: from sequencing data to chromosome contacts N Abdennur, G Fudenberg, IM Flyamer, AA Galitsyna, A Goloborodko, ... bioRxiv, 2023 | 19 | 2023 |
| Promoter and enhancer RNAs regulate chromatin reorganization and activation of miR-10b/HOXD locus, and neoplastic transformation in glioma E Deforzh, EJ Uhlmann, E Das, A Galitsyna, R Arora, H Saravanan, ... Molecular cell 82 (10), 1894-1908. e5, 2022 | 19 | 2022 |
| RedChIP identifies noncoding RNAs associated with genomic sites occupied by Polycomb and CTCF proteins AA Gavrilov, RI Sultanov, MD Magnitov, AA Galitsyna, EB Dashinimaev, ... Proceedings of the National Academy of Sciences 119 (1), e2116222119, 2022 | 17 | 2022 |
| Bioframe: operations on genomic intervals in pandas dataframes Open2C, N Abdennur, G Fudenberg, IM Flyamer, AA Galitsyna, ... Bioinformatics, btae088, 2024 | 14 | 2024 |
| Evolution of the genome 3D organization: comparison of fused and segregated globin gene clusters AP Kovina, NV Petrova, ES Gushchanskaya, KV Dolgushin, ... Molecular Biology and Evolution 34 (6), 1492-1504, 2017 | 10 | 2017 |
| Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data PI Kos, AA Galitsyna, SV Ulianov, MS Gelfand, SV Razin, AV Chertovich PLoS Computational Biology 17 (11), e1009546, 2021 | 8 | 2021 |
| Extrusion fountains are hallmarks of chromosome organization emerging upon zygotic genome activation A Galitsyna, SV Ulianov, NS Bykov, M Veil, M Gao, K Perevoschikova, ... bioRxiv, 2023 | 7 | 2023 |
| Comparison of genome architecture at two stages of male germline cell differentiation in Drosophila AA Ilyin, AD Kononkova, AV Golova, VV Shloma, OM Olenkina, ... Nucleic Acids Research 50 (6), 3203-3225, 2022 | 7 | 2022 |
| Mirror reads in Hi-C data AA Galitsyna, EE Khrameeva, SV Razin, MS Gelfand, AA Gavrilov Genomics and Computational Biology 3 (1), 36, 2017 | 5* | 2017 |
| Cumulative contact frequency of a chromatin region is an intrinsic property linked to its function MD Samborskaia, A Galitsyna, I Pletenev, A Trofimova, AA Mironov, ... PeerJ 8, e9566, 2020 | 3 | 2020 |
| HiChew: a Tool for TAD Clustering in Embryogenesis N Bykov, O Sigalova, M Gelfand, A Galitsyna Lecture Notes in Computer Science 12304, 2020 | 1 | 2020 |
| Studying RNA–DNA interactome by Red-C identifies noncoding RNAs associated with repressed chromatin compartment and reveals transcription dynamics AA Gavrilov, AA Zharikova, AA Galitsyna, AV Luzhin, NM Rubanova, ... bioRxiv, 859504, 2019 | 1 | 2019 |
