Ryan R. Cheng
Ryan R. Cheng
Center for Theoretical Biological Physics, Rice University
Verified email at rice.edu
TitleCited byYear
Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy
A Soranno, B Buchli, D Nettels, RR Cheng, S Müller-Späth, SH Pfeil, ...
Proceedings of the National Academy of Sciences 109 (44), 17800-17806, 2012
2392012
The energetics and physiological impact of cohesin extrusion
L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ...
Cell 173 (5), 1165-1178. e20, 2018
1332018
Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection
F Morcos, NP Schafer, RR Cheng, JN Onuchic, PG Wolynes
Proceedings of the National Academy of Sciences 111 (34), 12408-12413, 2014
802014
De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture
M Di Pierro, RR Cheng, EL Aiden, PG Wolynes, JN Onuchic
Proceedings of the National Academy of Sciences 114 (46), 12126-12131, 2017
792017
Aggregation effects on the emission spectra and dynamics of model oligomers of MEH-PPV
GA Sherwood, R Cheng, TM Smith, JH Werner, AP Shreve, LA Peteanu, ...
The Journal of Physical Chemistry C 113 (43), 18851-18862, 2009
742009
Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information
RR Cheng, F Morcos, H Levine, JN Onuchic
Proceedings of the National Academy of Sciences 111 (5), E563-E571, 2014
692014
A mechanistic study of electron transfer from the distal termini of electrode-bound, single-stranded DNAs
T Uzawa, RR Cheng, RJ White, DE Makarov, KW Plaxco
Journal of the American Chemical Society 132 (45), 16120-16126, 2010
522010
Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models
RR Cheng, AT Hawk, DE Makarov
The Journal of chemical physics 138 (7), 02B609, 2013
402013
The length and viscosity dependence of end-to-end collision rates in single-stranded DNA
T Uzawa, RR Cheng, KJ Cash, DE Makarov, KW Plaxco
Biophysical journal 97 (1), 205-210, 2009
342009
Elucidating the druggable interface of protein− protein interactions using fragment docking and coevolutionary analysis
F Bai, F Morcos, RR Cheng, H Jiang, JN Onuchic
Proceedings of the National Academy of Sciences 113 (50), E8051-E8058, 2016
322016
Molecular Weight Effect on the formation of β Phase Poly (9, 9′-dioctylfluorene) in Dilute Solutions
CW Cone, RR Cheng, DE Makarov, DA Vanden Bout
The Journal of Physical Chemistry B 115 (43), 12380-12385, 2011
282011
Charge‐Site Dependent Dissociation of Hydrogen‐Rich Radical Peptide Cations upon Vacuum UV Photoexcitation
JA Madsen, RR Cheng, TS Kaoud, KN Dalby, DE Makarov, JS Brodbelt
Chemistry-A European Journal, 2012
262012
The rate of intramolecular loop formation in DNA and polypeptides: the absence of the diffusion-controlled limit and fractional power-law viscosity dependence
RR Cheng, T Uzawa, KW Plaxco, DE Makarov
The Journal of Physical Chemistry B 113 (42), 14026-14034, 2009
262009
Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: A case study of …
RR Cheng, DE Makarov
Journal of Chemical Physics 134 (8), 85104, 2011
242011
Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides
RR Cheng, T Uzawa, KW Plaxco, DE Makarov
Biophysical journal 99 (12), 3959-3968, 2010
232010
Connecting the sequence-space of bacterial signaling proteins to phenotypes using coevolutionary landscapes
RR Cheng, O Nordesjö, RL Hayes, H Levine, SC Flores, JN Onuchic, ...
Molecular Biology and Evolution 33 (12), 3054–3064, 2016
222016
Chain Length and Substituent Effects on the Formation of Excimer-Like States in Nanoaggregates of CN-PPV Model Oligomers
GA Sherwood, R Cheng, K Chacon-Madrid, TM Smith, LA Peteanu, ...
The Journal of Physical Chemistry C 114 (28), 12078-12089, 2010
192010
Constructing sequence‐dependent protein models using coevolutionary information
RR Cheng, M Raghunathan, JK Noel, JN Onuchic
Protein Science 25 (1), 111-122, 2016
162016
A combined computational and genetic approach uncovers network interactions of the cyanobacterial circadian clock
JS Boyd, RR Cheng, ML Paddock, C Sancar, F Morcos, SS Golden
Journal of bacteriology 198 (18), 2439-2447, 2016
132016
End-to-surface reaction dynamics of a single surface-attached DNA or polypeptide
RR Cheng, DE Makarov
The Journal of Physical Chemistry B 114 (9), 3321-3329, 2010
102010
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Articles 1–20