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Charlie Kim
Charlie Kim
Verified email at ucsf.edu
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Year
Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages
EL Gautier, T Shay, J Miller, M Greter, C Jakubzick, S Ivanov, J Helft, ...
Nature immunology 13 (11), 1118-1128, 2012
20632012
Deciphering the transcriptional network of the dendritic cell lineage
JC Miller, BD Brown, T Shay, EL Gautier, V Jojic, A Cohain, G Pandey, ...
Nature immunology 13 (9), 888-899, 2012
8032012
Progranulin deficiency promotes circuit-specific synaptic pruning by microglia via complement activation
H Lui, J Zhang, SR Makinson, MK Cahill, KW Kelley, HY Huang, Y Shang, ...
Cell 165 (4), 921-935, 2016
6402016
Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks
D Malhotra, AL Fletcher, J Astarita, V Lukacs-Kornek, P Tayalia, ...
Nature immunology 13 (5), 499-510, 2012
4642012
Genome-Wide Screen for Salmonella Genes Required for Long-Term Systemic Infection of the Mouse
TD Lawley, K Chan, LJ Thompson, CC Kim, GR Govoni, DM Monack
PLoS pathogens 2 (2), e11, 2006
4272006
Transcriptional insights into the CD8+ T cell response to infection and memory T cell formation
JA Best, DA Blair, J Knell, E Yang, V Mayya, A Doedens, ML Dustin, ...
Nature immunology 14 (4), 404-412, 2013
3712013
Neutrophils prime a long-lived effector macrophage phenotype that mediates accelerated helminth expulsion
F Chen, W Wu, A Millman, JF Craft, E Chen, N Patel, JL Boucher, ...
Nature immunology 15 (10), 938-946, 2014
3682014
Genomic Comparison of Salmonella enterica Serovars and Salmonella bongori by Use of an S. enterica Serovar Typhimurium DNA Microarray
K Chan, S Baker, CC Kim, CS Detweiler, G Dougan, S Falkow
Journal of bacteriology 185 (2), 553-563, 2003
3142003
Molecular definition of the identity and activation of natural killer cells
NA Bezman, CC Kim, JC Sun, G Min-Oo, DW Hendricks, Y Kamimura, ...
Nature immunology 13 (10), 1000-1009, 2012
2942012
The transcriptional landscape of αβ T cell differentiation
M Mingueneau, T Kreslavsky, D Gray, T Heng, R Cruse, J Ericson, ...
Nature immunology 14 (6), 619-632, 2013
2882013
(+)-SJ733, a clinical candidate for malaria that acts through ATP4 to induce rapid host-mediated clearance of Plasmodium
MB Jiménez-Díaz, D Ebert, Y Salinas, A Pradhan, AM Lehane, ...
Proceedings of the National Academy of Sciences 111 (50), E5455-E5462, 2014
2572014
NK cells and immune “memory”
JC Sun, S Lopez-Verges, CC Kim, JL DeRisi, LL Lanier
The Journal of Immunology 186 (4), 1891-1897, 2011
2562011
Identification of MglA-Regulated Genes Reveals Novel Virulence Factors in Francisella tularensis
A Brotcke, DS Weiss, CC Kim, P Chain, S Malfatti, E Garcia, DM Monack
Infection and immunity 74 (12), 6642-6655, 2006
2352006
Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon
MJ Broadhurst, A Ardeshir, B Kanwar, J Mirpuri, UM Gundra, JM Leung, ...
PLoS pathogens 8 (11), e1003000, 2012
2272012
Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes
K Narayan, KE Sylvia, N Malhotra, CC Yin, G Martens, T Vallerskog, ...
Nature immunology 13 (5), 511-518, 2012
2162012
Identification of transcriptional regulators in the mouse immune system
V Jojic, T Shay, K Sylvia, O Zuk, X Sun, J Kang, A Regev, D Koller
Nature immunology 14 (6), 633-643, 2013
2022013
Improved analytical methods for microarray-based genome-composition analysis
CC Kim, EA Joyce, K Chan, S Falkow
Genome biology 3, 1-17, 2002
2022002
Trimming of sequence reads alters RNA-Seq gene expression estimates
CR Williams, A Baccarella, JZ Parrish, CC Kim
BMC bioinformatics 17, 1-13, 2016
2012016
Growth Phase-Dependent Response of Helicobacter pylori to Iron Starvation
DS Merrell, LJ Thompson, CC Kim, H Mitchell, LS Tompkins, A Lee, ...
Infection and immunity 71 (11), 6510-6525, 2003
1812003
The microRNA bantam functions in epithelial cells to regulate scaling growth of dendrite arbors in drosophila sensory neurons
JZ Parrish, P Xu, CC Kim, LY Jan, YN Jan
Neuron 63 (6), 788-802, 2009
1792009
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Articles 1–20