| Detection of mosaic and population-level structural variants with Sniffles2 M Smolka, LF Paulin, CM Grochowski, DW Horner, M Mahmoud, ... Nature biotechnology, 1-10, 2024 | 92 | 2024 |
| Comprehensive structural variant detection: from mosaic to population-level M Smolka, LF Paulin, CM Grochowski, DW Horner, M Mahmoud, ... BioRxiv, 2022.04. 04.487055, 2022 | 88 | 2022 |
| Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation M Kolmogorov, KJ Billingsley, M Mastoras, M Meredith, J Monlong, ... Nature Methods 20 (10), 1483-1492, 2023 | 60 | 2023 |
| Beyond the exome: what’s next in diagnostic testing for Mendelian conditions MH Wojcik, CM Reuter, S Marwaha, M Mahmoud, MH Duyzend, ... The American Journal of Human Genetics 110 (8), 1229-1248, 2023 | 54 | 2023 |
| Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes CS Chin, S Behera, A Khalak, FJ Sedlazeck, PH Sudmant, J Wagner, ... Nature Methods 20 (8), 1213-1221, 2023 | 25 | 2023 |
| STAG-CNS: an order-aware conserved noncoding sequences discovery tool for arbitrary numbers of species X Lai, S Behera, Z Liang, Y Lu, JS Deogun, JC Schnable Molecular plant 10 (7), 990-999, 2017 | 19 | 2017 |
| Plant transcriptome assembly: review and benchmarking S Behera, A Voshall Bioinformatics, 2022 | 18 | 2022 |
| KmerEstimate: a streaming algorithm for estimating k-mer counts with optimal space usage S Behera, S Gayen, JS Deogun, NV Vinodchandran Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018 | 15 | 2018 |
| A consensus-based ensemble approach to improve transcriptome assembly A Voshall, S Behera, X Li, XH Yu, K Kapil, JS Deogun, J Shanklin, ... BMC bioinformatics 22, 1-24, 2021 | 14* | 2021 |
| FixItFelix: improving genomic analysis by fixing reference errors S Behera, J LeFaive, P Orchard, M Mahmoud, LF Paulin, J Farek, ... Genome biology 24 (1), 31, 2023 | 13* | 2023 |
| Comprehensive genome analysis and variant detection at scale using DRAGEN S Behera, S Catreux, M Rossi, S Truong, Z Huang, M Ruehle, A Visvanath, ... Nature Biotechnology, 1-15, 2024 | 9* | 2024 |
| A pan-genome approach to decipher variants in the highly complex tandem repeat of LPA CS Chin, S Behera, GA Metcalf, RA Gibbs, E Boerwinkle, FJ Sedlazeck bioRxiv, 2022.06. 08.495395, 2022 | 9 | 2022 |
| A comparison of a campus cluster and open science grid platforms for protein-guided assembly using pegasus workflow management system N Pavlovikj, K Begcy, S Behera, M Campbell, H Walia, JS Deogun 2014 IEEE International Parallel & Distributed Processing Symposium …, 2014 | 7 | 2014 |
| Identification of allele-specific KIV-2 repeats and impact on Lp (a) measurements for cardiovascular disease risk S Behera, JR Belyeu, X Chen, LF Paulin, NQH Nguyen, E Newman, ... BMC Medical Genomics 17 (1), 255, 2024 | 6 | 2024 |
| Comprehensive Structural Variant Detection: From Mosaic to Population-Level. In bioRxiv (p. 2022.04. 04.487055) M Smolka, LF Paulin, CM Grochowski, M Mahmoud, S Behera, M Gandhi, ... | 5 | 2022 |
| The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms K Walker, D Kalra, R Lowdon, G Chen, D Molik, DC Soto, F Dabbaghie, ... F1000Research 11, 2022 | 5 | 2022 |
| An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates AM Mc Cartney, M Mahmoud, M Jochum, DP Agustinho, B Zorman, ... F1000Research 10, 2021 | 5 | 2021 |
| MinIsoClust: Isoform clustering using minhash and locality sensitive hashing S Behera, JS Deogun, EN Moriyama Proceedings of the 11th ACM International Conference on Bioinformatics …, 2020 | 5 | 2020 |
| Performance comparison and an ensemble approach of transcriptome assembly S Behera, A Voshall, JS Deogun, EN Moriyama 2017 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2017 | 5 | 2017 |
| Divergent evolution of extreme production of variant plant monounsaturated fatty acids L Gan, K Park, J Chai, EM Updike, H Kim, A Voshall, S Behera, XH Yu, ... Proceedings of the National Academy of Sciences 119 (30), e2201160119, 2022 | 4 | 2022 |
Fritz J SedlazeckHuman Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Verified email at bcm.edu
