David R Kelley

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityEmail verificata su jhu.edu
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonEmail verificata su uw.edu
David Gillis HendricksonEmail verificata su calicolabs.com
Loyal A. GoffJohns Hopkins Institute of Genetic MedicineEmail verificata su jhmi.edu
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentEmail verificata su jhu.edu
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityEmail verificata su cs.jhu.edu
Lior PachterBren Professor of Computational Biology, CaltechEmail verificata su caltech.edu
Adam RobertsGoogle DeepMindEmail verificata su google.com
Daehwan KimUniversity of Texas Southwestern Medical CenterEmail verificata su UTSouthwestern.edu
James YorkeDist. Univ. Research Prof of Math and Physics, Univ. of MarylandEmail verificata su umd.edu
Aleksey V ZiminResearch Scientist, Department of Biomedical Engineering, Johns Hopkins UnviersityEmail verificata su jhu.edu
Martin SauvageauAssistant Professor, Montreal Clinical Research Institute - IRCMEmail verificata su ircm.qc.ca
Ezgi HacisuleymanPostdoctoral fellow at Rockefeller UniversityEmail verificata su mail.rockefeller.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkEmail verificata su umd.edu
Daniel D SommerNational Biodefense Analysis and Countermeasures CenterEmail verificata su nbacc.dhs.gov
Carl KingsfordProfessor, Computational Biology Department, School of Computer Science, CarnegieEmail verificata su cs.cmu.edu
Bo LiuEngineering Manager of Data Infrastructure, Square

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David R Kelley

Calico Labs

Email verificata su calicolabs.com - Home page

Computational Biology


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature Protocols 7 (3), 562-578, 2012	13204	2012
A whole-genome assembly of the domestic cow, Bos taurus AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ... Genome biology 10, 1-10, 2009	1381	2009
Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks DR Kelley, J Snoek, JL Rinn Genome research 26 (7), 990-999, 2016	1079	2016
Quake: quality-aware detection and correction of sequencing errors DR Kelley, MC Schatz, SL Salzberg Genome Biology 11 (11), R116, 2010	742	2010
Effective gene expression prediction from sequence by integrating long-range interactions Ž Avsec, V Agarwal, D Visentin, JR Ledsam, A Grabska-Barwinska, ... Nature methods 18 (10), 1196-1203, 2021	740	2021
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ... Nature structural & molecular biology 21 (2), 198-206, 2014	704	2014
Assemblathon 1: A competitive assessment of de novo short read assembly methods DA Earl, K Bradnam, JS John, A Darling, D Lin, J Faas, HOK Yu, B Vince, ... Genome Research, 2011	638	2011
Transposable elements reveal a stem cell specific class of long noncoding RNAs DR Kelley, JL Rinn Genome Biology 13 (11), R107, 2012	616	2012
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells CA Gifford, MJ Ziller, H Gu, C Trapnell, J Donaghey, A Tsankov, ... Cell 153 (5), 1149-1163, 2013	504	2013
Long noncoding RNAs regulate adipogenesis L Sun, LA Goff, C Trapnell, R Alexander, KA Lo, E Hacisuleyman, ... Proceedings of the National Academy of Sciences 110 (9), 3387-3392, 2013	491	2013
Sequential regulatory activity prediction across chromosomes with convolutional neural networks DR Kelley, YA Reshef, M Bileschi, D Belanger, CY McLean, J Snoek Genome research 28 (5), 739-750, 2018	476	2018
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99^A SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ... BMC genomics 9, 1-16, 2008	433	2008
Widespread RNA binding by chromatin-associated proteins D G Hendrickson, DR Kelley, D Tenen, B Bernstein, JL Rinn Genome biology 17, 1-18, 2016	238	2016
Predicting 3D genome folding from DNA sequence with Akita G Fudenberg, DR Kelley, KS Pollard Nature Methods 17 (11), 1111-1117, 2020	226	2020
Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering DR Kelley, B Liu, AL Delcher, M Pop, SL Salzberg Nucleic Acids Research 40 (1), e9-e9, 2012	219	2012
Cross-species regulatory sequence activity prediction DR Kelley PLOS Computational Biology 16 (7), e1008050, 2020	188	2020
Genetic determinants and epigenetic effects of pioneer-factor occupancy J Donaghey, S Thakurela, J Charlton, JS Chen, ZD Smith, H Gu, R Pop, ... Nature genetics 50 (2), 250-258, 2018	180	2018
Solo: Doublet Identification in Single-Cell RNA-Seq via Semi-Supervised Deep Learning NJ Bernstein, NL Fong, I Lam, MA Roy, DG Hendrickson, DR Kelley Cell Systems 11 (1), 95-101. e5, 2020	173	2020
Murine single-cell RNA-seq reveals cell-identity-and tissue-specific trajectories of aging JC Kimmel, L Penland, ND Rubinstein, DG Hendrickson, DR Kelley, ... Genome research 29 (12), 2088-2103, 2019	146	2019
Clustering metagenomic sequences with interpolated Markov models D Kelley, S Salzberg BMC Bioinformatics 11 (1), 544, 2010	144	2010

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