Clément Arnarez
Clément Arnarez
ITQB Nova, Oeiras, Lisbon, Portugal
Verified email at itqb.unl.pt
TitleCited byYear
Improved parameters for the martini coarse-grained protein force field
DH de Jong, G Singh, WFD Bennett, C Arnarez, TA Wassenaar, ...
Journal of Chemical Theory and Computation 9 (1), 687-697, 2012
5722012
Lipid organization of the plasma membrane
HI Ingólfsson, MN Melo, FJ Van Eerden, C Arnarez, CA Lopez, ...
Journal of the american chemical society 136 (41), 14554-14559, 2014
3882014
Dry Martini, a coarse-grained force field for lipid membrane simulations with implicit solvent
C Arnarez, JJ Uusitalo, MF Masman, HI Ingólfsson, DH de Jong, MN Melo, ...
Journal of Chemical Theory and Computation 11 (1), 260-275, 2014
1542014
Identification of cardiolipin binding sites on cytochrome c oxidase at the entrance of proton channels
C Arnarez, SJ Marrink, X Periole
Scientific reports 3, 1263, 2013
1292013
Evidence for cardiolipin binding sites on the membrane-exposed surface of the cytochrome bc 1
C Arnarez, JP Mazat, J Elezgaray, SJ Marrink, X Periole
Journal of the American Chemical Society 135 (8), 3112-3120, 2013
1212013
Computational ‘microscopy’of cellular membranes
HI Ingólfsson, C Arnarez, X Periole, SJ Marrink
J Cell Sci 129 (2), 257-268, 2016
952016
Molecular mechanism of cardiolipin-mediated assembly of respiratory chain supercomplexes
C Arnarez, SJ Marrink, X Periole
Chemical science 7 (7), 4435-4443, 2016
482016
Helfrich model of membrane bending: from Gibbs theory of liquid interfaces to membranes as thick anisotropic elastic layers
F Campelo, C Arnarez, SJ Marrink, MM Kozlov
Advances in colloid and interface science 208, 25-33, 2014
402014
The activation mode of the mechanosensitive ion channel, MscL, by lysophosphatidylcholine differs from tension-induced gating
N Mukherjee, MD Jose, JP Birkner, M Walko, HI Ingolfsson, A Dimitrova, ...
The FASEB Journal 28 (10), 4292-4302, 2014
322014
Identification of two new cholesterol interaction sites on the A2A adenosine receptor
E Rouviere, C Arnarez, L Yang, E Lyman
Biophysical journal 113 (11), 2415-2424, 2017
262017
Atomistic and coarse grain topologies for the cofactors associated with the photosystem II core complex
DH de Jong, N Liguori, T van den Berg, C Arnarez, X Periole, SJ Marrink
The Journal of Physical Chemistry B 119 (25), 7791-7803, 2015
252015
The flitting of electrons in complex I: a stochastic approach
S Ransac, C Arnarez, JP Mazat
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1797 (6-7), 641-648, 2010
202010
High-throughput simulations reveal membrane-mediated effects of alcohols on MscL gating
MN Melo, C Arnarez, H Sikkema, N Kumar, M Walko, HJC Berendsen, ...
Journal of the American Chemical Society 139 (7), 2664-2671, 2017
152017
Hysteresis and the cholesterol dependent phase transition in binary lipid mixtures with the Martini model
C Arnarez, A Webb, E Rouvière, E Lyman
The Journal of Physical Chemistry B 120 (51), 13086-13093, 2016
92016
Stability and Structure of Protein–Lipoamino Acid Colloidal Particles: Toward Nasal Delivery of Pharmaceutically Active Proteins
C Bijani, C Arnarez, S Brasselet, C Degert, O Broussaud, J Elezgaray, ...
Langmuir 28 (13), 5783-5794, 2012
32012
Analyzing Simulations of Lipid Mixtures: Phase Boundaries, Tie-Lines and Critical Points
C Arnarez, SJ Marrink, MN Melo
Biophysical Journal 114 (3), 449a, 2018
2018
Role of Cholesterol in Adenosine A2A Receptor Activity
AS Robinson, C McGraw, ER Lyman, C Arnarez, E Rouviere
Biophysical Journal 114 (3), 1a, 2018
2018
Predicting Cholesterol Interaction Sites on GPCRs by Molecular Simulation
ER Lyman, C Arnarez, E Rouviere
Biophysical Journal 112 (3), 33a, 2017
2017
Specific lipid binding sites identified by coarse-grained simulations
C Arnarez, X Periole, S Marrink, E Lyman
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 252, 2016
2016
Chemically specific dynamic bond percolation model for computational screening of polymer electrolytes
M Webb, B Savoie, ZG Wang, TF Miller III
2016
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Articles 1–20