Sergey Nurk
Sergey Nurk
Visiting Fellow, NHGRI, NIH
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ...
Journal of computational biology 19 (5), 455-477, 2012
109052012
metaSPAdes: a new versatile metagenomic assembler
S Nurk, D Meleshko, A Korobeynikov, PA Pevzner
Genome research 27 (5), 824-834, 2017
8452017
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ...
Journal of Computational Biology 20 (10), 714-737, 2013
7152013
Assembling genomes and mini-metagenomes from highly chimeric reads
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Annual International Conference on Research in Computational Molecular …, 2013
4062013
ExSPAnder: a universal repeat resolver for DNA fragment assembly
AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ...
Bioinformatics 30 (12), i293-i301, 2014
782014
Model-driven discovery of underground metabolic functions in Escherichia coli
GI Guzmán, J Utrilla, S Nurk, E Brunk, JM Monk, A Ebrahim, BO Palsson, ...
Proceedings of the National Academy of Sciences 112 (3), 929-934, 2015
742015
Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
JS McLean, MJ Lombardo, MG Ziegler, M Novotny, J Yee-Greenbaum, ...
Genome research 23 (5), 867-877, 2013
652013
Research in computational molecular biology
S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ...
Proceedings of the 17th Annual International Conference, RECOMB 2013 …, 2013
612013
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
S Nurk, BP Walenz, A Rhie, MR Vollger, GA Logsdon, R Grothe, KH Miga, ...
BioRxiv, 2020
222020
What is the difference between the breakpoint graph and the de Bruijn graph?
Y Lin, S Nurk, PA Pevzner
BMC genomics 15 (S6), S6, 2014
202014
Metagenomics-based, strain-level analysis of Escherichia coli from a time-series of microbiome samples from a Crohn's disease patient
X Fang, JM Monk, S Nurk, M Akseshina, Q Zhu, C Gemmell, ...
Frontiers in microbiology 9, 2559, 2018
132018
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ...
Genome biology 20 (1), 1-14, 2019
122019
An O (20. 4058m) upper bound for circuit SAT
S Nurk
Steklov Institute of Mathematics at St. Petersburg, Tech. Rep. 10, 2009 …, 2009
72009
The structure, function, and evolution of a complete human chromosome 8
GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ...
bioRxiv, 2020
62020
Metagenomics strain resolution on assembly graphs
C Quince, S Nurk, S Raguideau, RS James, OS Soyer, JK Summers, ...
bioRxiv, 2020
12020
A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria
T Leăo, M Wang, N Moss, R da Silva, J Sanders, S Nurk, A Gurevich, ...
Marine Drugs 19 (1), 20, 2021
2021
SPAligner: alignment of long diverged molecular sequences to assembly graphs
T Dvorkina, D Antipov, A Korobeynikov, S Nurk
BMC bioinformatics 21 (12), 1-14, 2020
2020
Closing gaps in draft genome assemblies using Oxford Nanopore sequencing and Read-Until technology
SV Kazakov, VI Ulyantsev, S Nurk
BMC BIOINFORMATICS 20, 2019
2019
SPAligner: alignment of long diverged molecular sequences to assembly graphs
T Dvorkina, D Antipov, A Korobeynikov, S Nurk
BioRxiv, 744755, 2019
2019
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Articles 1–19