| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 10905 | 2012 |
| metaSPAdes: a new versatile metagenomic assembler S Nurk, D Meleshko, A Korobeynikov, PA Pevzner Genome research 27 (5), 824-834, 2017 | 845 | 2017 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 715 | 2013 |
| Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Annual International Conference on Research in Computational Molecular …, 2013 | 406 | 2013 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 78 | 2014 |
| Model-driven discovery of underground metabolic functions in Escherichia coli GI Guzmán, J Utrilla, S Nurk, E Brunk, JM Monk, A Ebrahim, BO Palsson, ... Proceedings of the National Academy of Sciences 112 (3), 929-934, 2015 | 74 | 2015 |
| Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform JS McLean, MJ Lombardo, MG Ziegler, M Novotny, J Yee-Greenbaum, ... Genome research 23 (5), 867-877, 2013 | 65 | 2013 |
| Research in computational molecular biology S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Proceedings of the 17th Annual International Conference, RECOMB 2013 …, 2013 | 61 | 2013 |
| HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads S Nurk, BP Walenz, A Rhie, MR Vollger, GA Logsdon, R Grothe, KH Miga, ... BioRxiv, 2020 | 22 | 2020 |
| What is the difference between the breakpoint graph and the de Bruijn graph? Y Lin, S Nurk, PA Pevzner BMC genomics 15 (S6), S6, 2014 | 20 | 2014 |
| Metagenomics-based, strain-level analysis of Escherichia coli from a time-series of microbiome samples from a Crohn's disease patient X Fang, JM Monk, S Nurk, M Akseshina, Q Zhu, C Gemmell, ... Frontiers in microbiology 9, 2559, 2018 | 13 | 2018 |
| Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome biology 20 (1), 1-14, 2019 | 12 | 2019 |
| An O (20. 4058m) upper bound for circuit SAT S Nurk Steklov Institute of Mathematics at St. Petersburg, Tech. Rep. 10, 2009 …, 2009 | 7 | 2009 |
| The structure, function, and evolution of a complete human chromosome 8 GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ... bioRxiv, 2020 | 6 | 2020 |
| Metagenomics strain resolution on assembly graphs C Quince, S Nurk, S Raguideau, RS James, OS Soyer, JK Summers, ... bioRxiv, 2020 | 1 | 2020 |
| A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria T Leăo, M Wang, N Moss, R da Silva, J Sanders, S Nurk, A Gurevich, ... Marine Drugs 19 (1), 20, 2021 | | 2021 |
| SPAligner: alignment of long diverged molecular sequences to assembly graphs T Dvorkina, D Antipov, A Korobeynikov, S Nurk BMC bioinformatics 21 (12), 1-14, 2020 | | 2020 |
| Closing gaps in draft genome assemblies using Oxford Nanopore sequencing and Read-Until technology SV Kazakov, VI Ulyantsev, S Nurk BMC BIOINFORMATICS 20, 2019 | | 2019 |
| SPAligner: alignment of long diverged molecular sequences to assembly graphs T Dvorkina, D Antipov, A Korobeynikov, S Nurk BioRxiv, 744755, 2019 | | 2019 |
Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
