| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 13698 | 2012 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1369* | 2013 |
| metaSPAdes: a new versatile metagenomic assembler S Nurk, D Meleshko, A Korobeynikov, PA Pevzner Genome research 27 (5), 824-834, 2017 | 1295 | 2017 |
| HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads S Nurk, BP Walenz, A Rhie, MR Vollger, GA Logsdon, R Grothe, KH Miga, ... Genome research 30 (9), 1291-1305, 2020 | 110 | 2020 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 89 | 2014 |
| Model-driven discovery of underground metabolic functions in Escherichia coli GI Guzmán, J Utrilla, S Nurk, E Brunk, JM Monk, A Ebrahim, BO Palsson, ... Proceedings of the National Academy of Sciences 112 (3), 929-934, 2015 | 76 | 2015 |
| Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform JS McLean, MJ Lombardo, MG Ziegler, M Novotny, J Yee-Greenbaum, ... Genome research 23 (5), 867-877, 2013 | 71 | 2013 |
| The structure, function and evolution of a complete human chromosome 8 GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ... Nature 593 (7857), 101-107, 2021 | 59 | 2021 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... bioRxiv, 2021 | 30 | 2021 |
| Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome biology 20 (1), 1-14, 2019 | 25 | 2019 |
| What is the difference between the breakpoint graph and the de Bruijn graph? Y Lin, S Nurk, PA Pevzner BMC genomics 15 (6), 1-11, 2014 | 23 | 2014 |
| Metagenomics-based, strain-level analysis of Escherichia coli from a time-series of microbiome samples from a Crohn's disease patient X Fang, JM Monk, S Nurk, M Akseshina, Q Zhu, C Gemmell, ... Frontiers in microbiology 9, 2559, 2018 | 19 | 2018 |
| STRONG: metagenomics strain resolution on assembly graphs C Quince, S Nurk, S Raguideau, R James, OS Soyer, JK Summers, ... Genome biology 22 (1), 1-34, 2021 | 9* | 2021 |
| Segmental duplications and their variation in a complete human genome MR Vollger, X Guitart, PC Dishuck, L Mercuri, WT Harvey, A Gershman, ... bioRxiv, 2021 | 8 | 2021 |
| An O(2^{0.4058m}) upper bound for circuit sat S Nurk Steklov Institute of Mathematics at St. Petersburg, Tech. Rep. 10, 2009 …, 2009 | 7 | 2009 |
| A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria T Leăo, M Wang, N Moss, R da Silva, J Sanders, S Nurk, A Gurevich, ... Marine drugs 19 (1), 20, 2021 | 4 | 2021 |
| Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... bioRxiv, 2021 | 3 | 2021 |
| Critical Assessment of Metagenome Interpretation-the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, A Gurevich, G Robertson, M Alser, ... bioRxiv, 2021 | 3 | 2021 |
| SPAligner: alignment of long diverged molecular sequences to assembly graphs T Dvorkina, D Antipov, A Korobeynikov, S Nurk BMC bioinformatics 21 (12), 1-14, 2020 | 3 | 2020 |
Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
