James Yurkovich
James Yurkovich
Translational Research Fellow at the Institute for Systems Biology
Email verificata su systemsbiology.org - Home page
Titolo
Citata da
Citata da
Anno
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
3492019
Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics
A Bordbar, JT Yurkovich, G Paglia, O Rolfsson, E Sigurjnsson, ...
Scientific reports 7 (1), 1-12, 2017
81*2017
Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance
ES Kavvas, E Catoiu, N Mih, JT Yurkovich, Y Seif, N Dillon, D Heckmann, ...
Nature communications 9 (1), 1-9, 2018
652018
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities
X Fang, A Sastry, N Mih, D Kim, J Tan, JT Yurkovich, CJ Lloyd, Y Gao, ...
Proceedings of the National Academy of Sciences 114 (38), 10286-10291, 2017
572017
BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree
CJ Norsigian, N Pusarla, JL McConn, JT Yurkovich, A Drger, BO Palsson, ...
Nucleic acids research 48 (D1), D402-D406, 2020
462020
Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits
Y Seif, E Kavvas, JC Lachance, JT Yurkovich, SP Nuccio, X Fang, ...
Nature communications 9 (1), 1-12, 2018
462018
Toward community standards and software for whole-cell modeling
D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ...
IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016
462016
Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data
L Yang, J Tan, EJ O’Brien, JM Monk, D Kim, HJ Li, P Charusanti, ...
Proceedings of the National Academy of Sciences 112 (34), 10810-10815, 2015
362015
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
Y Gao, JT Yurkovich, SW Seo, I Kabimoldayev, A Drger, K Chen, ...
Nucleic Acids Research, gky752, 2018
342018
Principles of proteome allocation are revealed using proteomic data and genome-scale models
L Yang, JT Yurkovich, CJ Lloyd, A Ebrahim, MA Saunders, BO Palsson
Scientific reports 6 (1), 1-8, 2016
282016
Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions
ES Kavvas, Y Seif, JT Yurkovich, C Norsigian, S Poudel, WW Greenwald, ...
BMC systems biology 12 (1), 1-15, 2018
272018
Quantitative time-course metabolomics in human red blood cells reveal the temperature dependence of human metabolic networks
JT Yurkovich, DC Zielinski, L Yang, G Paglia, O Rolfsson, ...
Journal of Biological Chemistry 292 (48), 19556-19564, 2017
262017
Modeling the multi-scale mechanisms of macromolecular resource allocation
L Yang, JT Yurkovich, ZA King, BO Palsson
Current opinion in microbiology 45, 8-15, 2018
242018
Cellular responses to reactive oxygen species are predicted from molecular mechanisms
L Yang, N Mih, A Anand, JH Park, J Tan, JT Yurkovich, JM Monk, CJ Lloyd, ...
Proceedings of the National Academy of Sciences 116 (28), 14368-14373, 2019
232019
Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow
E Brunk, RL Chang, J Xia, H Hefzi, JT Yurkovich, D Kim, E Buckmiller, ...
Proceedings of the National Academy of Sciences 115 (43), 11096-11101, 2018
232018
Quantitative-omic data empowers bottom-up systems biology
JT Yurkovich, BO Palsson
Current opinion in biotechnology 51, 130-136, 2018
212018
Temperature-dependent estimation of Gibbs energies using an updated group-contribution method
B Du, Z Zhang, S Grubner, JT Yurkovich, BO Palsson, DC Zielinski
Biophysical journal 114 (11), 2691-2702, 2018
202018
Community standards to facilitate development and address challenges in metabolic modeling
MA Carey, A Drger, ME Beber, JA Papin, JT Yurkovich
Molecular Systems Biology 16 (8), e9235, 2020
142020
A systems approach to clinical oncology uses deep phenotyping to deliver personalized care
JT Yurkovich, Q Tian, ND Price, L Hood
Nature Reviews Clinical Oncology 17 (3), 183-194, 2020
112020
Intricate genetic programs controlling dormancy in Mycobacterium tuberculosis
EJR Peterson, AA Abidi, ML Arrieta-Ortiz, B Aguilar, JT Yurkovich, A Kaur, ...
Cell reports 31 (4), 107577, 2020
102020
Il sistema al momento non pu eseguire l'operazione. Riprova pi tardi.
Articoli 1–20