Cenk Sahinalp

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Fereydoun HormozdiariAssociate Professor at University of California - DavisEmail verificata su ucdavis.edu
Evan EichlerProfessor of Genome Sciences, University of WashingtonEmail verificata su gs.washington.edu
Can AlkanBilkent University, Ankara, TurkeyEmail verificata su cs.bilkent.edu.tr
Faraz HachAssistant Professor at University of British ColumbiaEmail verificata su ubc.ca
The Phuong DaoMemorial Sloan Kettering Cancer CenterEmail verificata su mskcc.org
Colin Collins, PhDProfessor of Urologic Sciences, University of British Columbia and Vancouver Prostate CentreEmail verificata su prostatecentre.com
Andrew McPhersonPost Doctoral Fellow, University of British ColumbiaEmail verificata su bccrc.ca
Iman HajirasoulihaAssociate Professor, Weill Cornell Medicine of Cornell University, New York CityEmail verificata su med.cornell.edu
Salem MalikicCancer Data Science Laboratory, National Cancer Institute, National Institutes of HealthEmail verificata su nih.gov
Sohrab ShahMemorial Sloan Kettering Cancer CenterEmail verificata su mskcc.org
Ibrahim NumanagićUniversity of VictoriaEmail verificata su uvic.ca
Raheleh SalariNatera IncEmail verificata su natera.com
Funda ErgunProfessor of Computer Science, Indiana UniversityEmail verificata su indiana.edu
Martin EsterDistinguished Professor of Computer Science, Simon Fraser UniversityEmail verificata su cs.sfu.ca
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgEmail verificata su informatik.uni-freiburg.de
Emre KarakocPrincipal Bioinformatician, Wellcome Sanger InstituteEmail verificata su sanger.ac.uk
Uzi VishkinProfessor, The University of Maryland Institute for Advanced Computer Studies (UMIACS) andEmail verificata su umd.edu
Artem CherkasovUniversity of British ColumbiaEmail verificata su interchange.ubc.ca
Deniz YorukogluMassachusetts Institute of TechnologyEmail verificata su mit.edu
Alexander WyattAssociate Professor, University of British ColumbiaEmail verificata su prostatecentre.com

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Cenk Sahinalp

Senior Investigator, Cancer Data Science Lab, National Cancer Institute, NIH

Email verificata su nih.gov - Home page

Bioinformatics Computational Biology Genomics Cancer Algorithms


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
A map of human genome variation from population scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061, 2010	8313	2010
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes NY Yu, JR Wagner, MR Laird, G Melli, S Rey, R Lo, P Dao, SC Sahinalp, ... Bioinformatics 26 (13), 1608-1615, 2010	2194	2010
Personalized copy number and segmental duplication maps using next-generation sequencing C Alkan, JM Kidd, T Marques-Bonet, G Aksay, F Antonacci, F Hormozdiari, ... Nature genetics 41 (10), 1061-1067, 2009	946	2009
Demographic history and rare allele sharing among human populations S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ... Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011	667	2011
The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020	635	2020
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data A McPherson, F Hormozdiari, A Zayed, R Giuliany, G Ha, MGF Sun, ... PLoS computational biology 7 (5), e1001138, 2011	589	2011
Genomic hallmarks of localized, non-indolent prostate cancer M Fraser, VY Sabelnykova, TN Yamaguchi, LE Heisler, J Livingstone, ... Nature 541 (7637), 359-364, 2017	501	2017
Spatial genomic heterogeneity within localized, multifocal prostate cancer PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ... Nature genetics 47 (7), 736-745, 2015	467	2015
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp Genome research 19 (7), 1270-1278, 2009	379	2009
mrsFAST: a cache-oblivious algorithm for short-read mapping F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ... Nature methods 7 (8), 576-577, 2010	334	2010
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa RD Morin, G Aksay, E Dolgosheina, HA Ebhardt, V Magrini, ER Mardis, ... Genome research 18 (4), 571-584, 2008	334	2008
Widespread and functional RNA circularization in localized prostate cancer S Chen, V Huang, X Xu, J Livingstone, F Soares, J Jeon, Y Zeng, JT Hua, ... Cell 176 (4), 831-843. e22, 2019	299	2019
Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... Bioinformatics 26 (12), i350-i357, 2010	267	2010
Applicability domains for classification problems: benchmarking of distance to models for Ames mutagenicity set I Sushko, S Novotarskyi, R Körner, AK Pandey, A Cherkasov, J Li, ... Journal of chemical information and modeling 50 (12), 2094-2111, 2010	229	2010
Biomolecular network motif counting and discovery by color coding N Alon, P Dao, I Hajirasouliha, F Hormozdiari, SC Sahinalp Bioinformatics 24 (13), i241-i249, 2008	225	2008
The structure and evolution of centromeric transition regions within the human genome X She, JE Horvath, Z Jiang, G Liu, TS Furey, L Christ, R Clark, T Graves, ... Nature 430 (7002), 857-864, 2004	212	2004
From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ... The Journal of pathology 227 (3), 286-297, 2012	195	2012
The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression YS Niknafs, S Han, T Ma, C Speers, C Zhang, K Wilder-Romans, MK Iyer, ... Nature communications 7 (1), 12791, 2016	194	2016
Clonality inference in multiple tumor samples using phylogeny S Malikic, AW McPherson, N Donmez, CS Sahinalp Bioinformatics 31 (9), 1349-1356, 2015	188	2015
Communication complexity of document exchange G Cormode, M Paterson, SC Sahinalp, U Vishkin Proc. of the 11th ACM-SIAM Annual Symposium on Discrete Algorithms, 197-206, 2000	177	2000

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