Stian Soiland-Reyes

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Carole GobleProfessor of Computer Science, University of ManchesterVerified email at cs.man.ac.uk
Khalid BelhajjamePSL, Université Paris-Dauphine, LAMSADEVerified email at dauphine.fr
Daniel GarijoOntology Engineering Group, UPM and Information Sciences Institute, USCVerified email at upm.es
Michael R. CrusoeCommon Workflow Language project, and othersVerified email at commonwl.org
Timothy LeboRensselaer Polytechnic InstituteVerified email at rpi.edu
Hervé MénagerInstitut PasteurVerified email at pasteur.fr
James CheneyProfessor, Laboratory for Foundations of Computer Science, University of EdinburghVerified email at inf.ed.ac.uk
Paolo MissierProfessor of Big Data Engineering and AnalyticsVerified email at acm.org
Peter AmstutzCuriiVerified email at curii.com
jun zhaoOxford UniversityVerified email at cs.ox.ac.uk
Katy WolstencroftAssistant Professor, Bioinformatics, Leiden University, LIACS, NetherlandsVerified email at liacs.leidenuniv.nl
Alan R WilliamsTechnical Manager, School of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Robert HainesAssociate Director - Research IT; Honorary Lecturer (Department of Computer Science), University ofVerified email at manchester.ac.uk
Sean BechhoferReader, School of Computer Science, University of ManchesterVerified email at manchester.ac.uk
David De RoureProfessor of e-Research, University of OxfordVerified email at oerc.ox.ac.uk
Timothy W. ClarkAssociate Professor of Public Health Sciences and Data Science, University of VirginiaVerified email at virginia.edu
Oscar CorchoOntology Engineering Group, Departamento de Inteligencia Artificial, UPMVerified email at fi.upm.es
Leyla Jael García CastroZB MED Information Centre for Life SciencesVerified email at zbmed.de
Raul PalmaPoznan Supercomputing and Networking CenterVerified email at man.poznan.pl
Donal FellowsSenior Software Engineer, University of ManchesterVerified email at manchester.ac.uk

Stian Soiland-Reyes

Technical Architect, School of Computer Science, University of Manchester

Verified email at manchester.ac.uk - Homepage

Reproducibility Workflows Open Science Web Standards Linked Data


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The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud K Wolstencroft, R Haines, D Fellows, A Williams, D Withers, S Owen, ... Nucleic acids research 41 (W1), W557-W561, 2013	912	2013
PROV-O: The PROV Ontology T Lebo, S Sahoo, D McGuinness, K Belhajjame, J Cheney, D Corsar, ... W3C Recommendation, 2013	784*	2013
Taverna, reloaded P Missier, S Soiland-Reyes, S Owen, W Tan, A Nenadic, I Dunlop, ... Scientific and Statistical Database Management: 22nd International …, 2010	256	2010
Common workflow language, v1.0 P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... Figshare, 2016	236*	2016
Workflow-centric research objects: First class citizens in scholarly discourse. Ó Corcho, D Garijo Verdejo, K Belhajjame, J Zhao, P Missier, D Newman, ... Informatica, 2012	166	2012
PROV model primer K Belhajjame, H Deus, D Garijo, G Klyne, P Missier, S Soiland-Reyes, ... URL: http://www.w3.org/TR/prov-primer, 2012	145*	2012
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 1-9, 2014	135	2014
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ... PLoS biology 15 (6), e2001414, 2017	128	2017
PAV ontology: provenance, authoring and versioning P Ciccarese, S Soiland-Reyes, K Belhajjame, AJG Gray, C Goble, T Clark Journal of Biomedical Semantics 4 (37), 2013	109	2013
FAIR computational workflows C Goble, S Cohen-Boulakia, S Soiland-Reyes, D Garijo, Y Gil, MR Crusoe, ... Data Intelligence 2 (1-2), 108-121, 2020	104	2020
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research K Wolstencroft, O Krebs, JL Snoep, NJ Stanford, F Bacall, M Golebiewski, ... Nucleic acids research 45 (D1), D404-D407, 2017	104	2017
Open Annotation data model R Sanderson, P Ciccarese, H Van de Sompel, S Bradshaw, D Brickley, ... W3C Community draft, 2013	88*	2013
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv FZ Khan, S Soiland-Reyes, RO Sinnott, A Lonie, C Goble, MR Crusoe GigaScience 8 (11), giz095, 2019	62	2019
Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language MR Crusoe, S Abeln, A Iosup, P Amstutz, J Chilton, N Tijanić, H Ménager, ... Communications of the ACM 65 (6), 54-63, 2022	58*	2022
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data P Li, JI Castrillo, G Velarde, I Wassink, S Soiland-Reyes, S Owen, ... BMC bioinformatics 9, 1-11, 2008	57	2008
Designing the W3C open annotation data model R Sanderson, P Ciccarese, H Van De Sompel Association for Computing Machinery, 2013	55	2013
I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets K Chard, M D'Arcy, B Heavner, I Foster, C Kesselman, R Madduri, ... 2016 Ieee international conference on big data (big data), 319-328, 2016	50	2016
FAIR principles for research software (FAIR4RS principles) NPC Hong, DS Katz, M Barker, AL Lamprecht, C Martinez, ...	49	2022
The role of metadata in reproducible computational research J Leipzig, D Nüst, CT Hoyt, K Ram, J Greenberg Patterns 2 (9), 100322, 2021	49	2021
Community-driven development for computational biology at Sprints, Hackathons and Codefests S Möller, E Afgan, M Banck, RJP Bonnal, T Booth, J Chilton, PJA Cock, ... BMC bioinformatics 15, 1-7, 2014	47	2014

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