Stian Soiland-Reyes

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Carole GobleProfessor of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Khalid BelhajjamePSL, Université Paris-Dauphine, LAMSADEVerified email at dauphine.fr
Daniel GarijoOntology Engineering Group, UPM and Information Sciences Institute, USCVerified email at upm.es
Michael R. CrusoeCommon Workflow Language project, and othersVerified email at commonwl.org
Hervé MénagerInstitut PasteurVerified email at pasteur.fr
James CheneyProfessor, Laboratory for Foundations of Computer Science, University of EdinburghVerified email at inf.ed.ac.uk
Peter AmstutzCuriiVerified email at curii.com
Timothy LeboRensselaer Polytechnic InstituteVerified email at rpi.edu
Paolo MissierProfessor of Big Data Engineering and AnalyticsVerified email at acm.org
Simone LeoResearcher, CRS4Verified email at crs4.it
Leyla Jael García CastroZB MED Information Centre for Life SciencesVerified email at zbmed.de
jun zhaoOxford UniversityVerified email at cs.ox.ac.uk
Katy WolstencroftGroup Leader, Life Science Semantics, Bioinformatics and Data Science, Leiden University, LIACSVerified email at liacs.leidenuniv.nl
Alan R WilliamsTechnical Manager, School of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Herbert Van de SompelDANS & Ghent UniversityVerified email at dans.knaw.nl
Peter SeftonManger, eResearch University of Western SydneyVerified email at uws.edu.au
Frederik CoppensProject Leader, VIB, UGentVerified email at psb.vib-ugent.be
Alex Hardistyformerly Director of Informatics Projects, Cardiff UniversityVerified email at hardisty.plus.com
Robert HainesDirector of Research IT; Honorary Lecturer (Computer Science), University of ManchesterVerified email at manchester.ac.uk
Sean BechhoferProfessor of Computer Science, Dept of Computer Science, University of ManchesterVerified email at manchester.ac.uk

Stian Soiland-Reyes

Senior Lecturer, Department of Computer Science, The University of Manchester

Verified email at manchester.ac.uk - Homepage

Reproducibility Workflows Linked Data FAIR provenance


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The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud K Wolstencroft, R Haines, D Fellows, A Williams, D Withers, S Owen, ... Nucleic acids research 41 (W1), W557-W561, 2013	955	2013
PROV-O: The PROV Ontology T Lebo, S Sahoo, D McGuinness, K Belhajjame, J Cheney, D Corsar, ... W3C Recommendation, 2013	925*	2013
Common workflow language, v1.0 P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ... Figshare, 2016	286*	2016
Taverna, reloaded P Missier, S Soiland-Reyes, S Owen, W Tan, A Nenadic, I Dunlop, ... Scientific and Statistical Database Management: 22nd International …, 2010	258	2010
Workflow-centric research objects: First class citizens in scholarly discourse. Ó Corcho, D Garijo Verdejo, K Belhajjame, J Zhao, P Missier, D Newman, ... Informatica, 2012	168	2012
FAIR computational workflows C Goble, S Cohen-Boulakia, S Soiland-Reyes, D Garijo, Y Gil, MR Crusoe, ... Data Intelligence 2 (1-2), 108-121, 2020	164	2020
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15, 1-9, 2014	162	2014
PROV model primer K Belhajjame, H Deus, D Garijo, G Klyne, P Missier, S Soiland-Reyes, ... URL: http://www.w3.org/TR/prov-primer, 2012	160*	2012
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ... PLoS biology 15 (6), e2001414, 2017	151	2017
Methods Included: Standardizing Computational Reuse and Portability with the Common Workflow Language MR Crusoe, S Abeln, A Iosup, P Amstutz, J Chilton, N Tijanić, H Ménager, ... Communications of the ACM 65 (6), 54-63, 2022	134	2022
FAIRDOMHub: a repository and collaboration environment for sharing systems biology research K Wolstencroft, O Krebs, JL Snoep, NJ Stanford, F Bacall, M Golebiewski, ... Nucleic acids research 45 (D1), D404-D407, 2017	125	2017
PAV ontology: provenance, authoring and versioning P Ciccarese, S Soiland-Reyes, K Belhajjame, AJG Gray, C Goble, T Clark Journal of Biomedical Semantics 4 (37), 2013	125	2013
Packaging research artefacts with RO-Crate S Soiland-Reyes, P Sefton, M Crosas, LJ Castro, F Coppens, ... Data Science, 2022	114*	2022
FAIR principles for research software (FAIR4RS principles) NP Chue Hong, DS Katz, M Barker, AL Lamprecht, C Martinez, ... Zenodo, 2022	103	2022
The role of metadata in reproducible computational research J Leipzig, D Nüst, CT Hoyt, K Ram, J Greenberg Patterns 2 (9), 2021	91	2021
Open Annotation data model R Sanderson, P Ciccarese, H Van de Sompel, S Bradshaw, D Brickley, ... W3C Community draft, 2013	86*	2013
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv FZ Khan, S Soiland-Reyes, RO Sinnott, A Lonie, C Goble, MR Crusoe GigaScience 8 (11), giz095, 2019	85	2019
Implementing FAIR digital objects in the EOSC-Life workflow collaboratory C Goble, S Soiland-Reyes, F Bacall, S Owen, A Williams, I Eguinoa, ... Zenodo, 2021	67*	2021
Designing the W3C open annotation data model R Sanderson, P Ciccarese, H Van De Sompel Association for Computing Machinery, 2013	66	2013
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data P Li, JI Castrillo, G Velarde, I Wassink, S Soiland-Reyes, S Owen, ... BMC bioinformatics 9, 1-11, 2008	58	2008

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