Guillaume Rizk
Guillaume Rizk
Unknown affiliation
Verified email at enancio.com
Title
Cited by
Cited by
Year
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
3342017
DSK: k-mer counting with very low memory usage
G Rizk, D Lavenier, R Chikhi
Bioinformatics 29 (5), 652-653, 2013
2622013
Space-efficient and exact de Bruijn graph representation based on a Bloom filter
R Chikhi, G Rizk
Algorithms for Molecular Biology 8 (1), 22, 2013
2562013
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
V Wucher, F Legeai, B Hedan, G Rizk, L Lagoutte, T Leeb, V Jagannathan, ...
Nucleic acids research 45 (8), e57-e57, 2017
1492017
GASSST: global alignment short sequence search tool
G Rizk, D Lavenier
Bioinformatics 26 (20), 2534-2540, 2010
1082010
Space-efficient and exact de Bruijn graph representation based on a Bloom filter
R Chikhi, G Rizk
International Workshop on Algorithms in Bioinformatics, 236-248, 2012
1002012
Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
F Legeai, G Rizk, T Walsh, O Edwards, K Gordon, D Lavenier, N Leterme, ...
BMC genomics 11 (1), 281, 2010
852010
Reference-free detection of isolated SNPs
R Uricaru, G Rizk, V Lacroix, E Quillery, O Plantard, R Chikhi, C Lemaitre, ...
Nucleic acids research 43 (2), e11-e11, 2015
842015
Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph
G Benoit, C Lemaitre, D Lavenier, E Drezen, T Dayris, R Uricaru, G Rizk
BMC bioinformatics 16 (1), 288, 2015
782015
GATB: genome assembly & analysis tool box
E Drezen, G Rizk, R Chikhi, C Deltel, C Lemaitre, P Peterlongo, ...
Bioinformatics 30 (20), 2959-2961, 2014
662014
GPU accelerated RNA folding algorithm
G Rizk, D Lavenier, S Rajopadhye
GPU Computing Gems Emerald Edition, 199-210, 2011
592011
MindTheGap: integrated detection and assembly of short and long insertions
G Rizk, A Gouin, R Chikhi, C Lemaitre
Bioinformatics 30 (24), 3451-3457, 2014
502014
Fast and scalable minimal perfect hashing for massive key sets
A Limasset, G Rizk, R Chikhi, P Peterlongo
arXiv preprint arXiv:1702.03154, 2017
382017
Finding maximum cliques on the d-wave quantum annealer
G Chapuis, H Djidjev, G Hahn, G Rizk
Journal of Signal Processing Systems 91 (3-4), 363-377, 2019
312019
Bloocoo, a memory efficient read corrector
G Benoit, D Lavenier, C Lemaitre, G Rizk
152014
Efficient combinatorial optimization using quantum annealing
HN Djidjev, G Chapuis, G Hahn, G Rizk
arXiv preprint arXiv:1801.08653, 2018
92018
Finding maximum cliques on a quantum annealer
G Chapuis, H Djidjev, G Hahn, G Rizk
Proceedings of the Computing Frontiers Conference, 63-70, 2017
92017
Whole genome re-sequencing: lessons from unmapped reads
A Gouin, P Nouhaud, F Legeai, G Rizk, JC Simon, C Lemaitre
52013
Benchmark data sets, software results and reference data for the first CAMI challenge
A Sczyrba, P Hofman, P Belmann, D Koslicki, S Janssen, J Dröge, ...
GigaScience Database, 2017
42017
Compression of high throughput sequencing data with probabilistic de Bruijn graph
G Benoit, C Lemaitre, D Lavenier, G Rizk
arXiv preprint arXiv:1412.5932, 2014
42014
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Articles 1–20