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Pejman Mohammadi
Pejman Mohammadi
Associate Professor, University of Washington
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Genetic effects on gene expression across human tissues
GTEx Consortium
Nature 550 (7675), 204, 2017
3237*2017
The GTEx Consortium atlas of genetic regulatory effects across human tissues
GTEx Consortium
Science 369 (6509), 1318-1330, 2020
23732020
A primer on deep learning in genomics
J Zou, M Huss, A Abid, P Mohammadi, A Torkamani, A Telenti
Nature genetics 51 (1), 12-18, 2019
6972019
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
5262017
The impact of sex on gene expression across human tissues
M Oliva, M Muñoz-Aguirre, S Kim-Hellmuth, V Wucher, ADH Gewirtz, ...
Science 369 (6509), eaba3066, 2020
4022020
Tools and best practices for data processing in allelic expression analysis
SE Castel, A Levy-Moonshine, P Mohammadi, E Banks, T Lappalainen
Genome biology 16, 1-12, 2015
3862015
IFI16 is required for DNA sensing in human macrophages by promoting production and function of cGAMP
KL Jønsson, A Laustsen, C Krapp, KA Skipper, K Thavachelvam, D Hotter, ...
Nature communications 8 (1), 14391, 2017
2822017
A quantitative proteome map of the human body
L Jiang, M Wang, S Lin, R Jian, X Li, J Chan, G Dong, H Fang, ...
Cell 183 (1), 269-283. e19, 2020
2802020
Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk
SE Castel, A Cervera, P Mohammadi, F Aguet, F Reverter, A Wolman, ...
Nature genetics 50 (9), 1327-1334, 2018
1972018
24 hours in the life of HIV-1 in a T cell line
P Mohammadi, S Desfarges, I Bartha, B Joos, N Zangger, M Muñoz, ...
PLoS Pathog 9 (1), e1003161, 2013
1872013
Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
S Kim-Hellmuth, M Bechheim, B Pütz, P Mohammadi, Y Nédélec, ...
Nature communications 8 (1), 1-10, 2017
1672017
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ...
Genome research 27 (11), 1843-1858, 2017
1652017
Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change
P Mohammadi, SE Castel, AA Brown, T Lappalainen
Genome research 27 (11), 1872-1884, 2017
1322017
Transcriptome variation in human tissues revealed by long-read sequencing
DA Glinos, G Garborcauskas, P Hoffman, N Ehsan, L Jiang, A Gokden, ...
Nature 608 (7922), 353-359, 2022
1252022
Transcriptomic signatures across human tissues identify functional rare genetic variation
NM Ferraro, BJ Strober, J Einson, NS Abell, F Aguet, AN Barbeira, ...
Science 369 (6509), eaaz5900, 2020
125*2020
Rare variant phasing and haplotypic expression from RNA sequencing with phASER
SE Castel, P Mohammadi, WK Chung, Y Shen, T Lappalainen
Nature communications 7 (1), 12817, 2016
1202016
Population-scale tissue transcriptomics maps long non-coding RNAs to complex disease
OM de Goede, DC Nachun, NM Ferraro, MJ Gloudemans, AS Rao, ...
Cell 184 (10), 2633-2648. e19, 2021
1082021
Genetic regulatory variation in populations informs transcriptome analysis in rare disease
P Mohammadi, SE Castel, BB Cummings, J Einson, C Sousa, P Hoffman, ...
Science 366 (6463), 351-356, 2019
972019
Dynamics of HIV latency and reactivation in a primary CD4+ T cell model
P Mohammadi, J Di Iulio, M Munoz, R Martinez, I Bartha, M Cavassini, ...
PLoS pathogens 10 (5), e1004156, 2014
972014
A vast resource of allelic expression data spanning human tissues
SE Castel, F Aguet, P Mohammadi, KG Ardlie, T Lappalainen
Genome biology 21, 1-12, 2020
852020
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Artikelen 1–20