Pejman Mohammadi
Pejman Mohammadi
Assistant professor, The Scripps Research Institute
Geverifieerd e-mailadres voor scripps.edu - Homepage
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Genetic effects on gene expression across human tissues
GTEx Consortium
Nature 550 (7675), 204, 2017
13172017
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
2182017
Tools and best practices for data processing in allelic expression analysis
SE Castel, A Levy-Moonshine, P Mohammadi, E Banks, T Lappalainen
Genome biology 16 (1), 195, 2015
2062015
A primer on deep learning in genomics
J Zou, M Huss, A Abid, P Mohammadi, A Torkamani, A Telenti
Nature genetics 51 (1), 12-18, 2019
1802019
IFI16 is required for DNA sensing in human macrophages by promoting production and function of cGAMP
KL Jønsson, A Laustsen, C Krapp, KA Skipper, K Thavachelvam, D Hotter, ...
Nature communications 8 (1), 1-17, 2017
1472017
24 hours in the life of HIV-1 in a T cell line
P Mohammadi, S Desfarges, I Bartha, B Joos, N Zangger, M Muñoz, ...
PLoS Pathog 9 (1), e1003161, 2013
1262013
Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk
SE Castel, A Cervera, P Mohammadi, F Aguet, F Reverter, A Wolman, ...
Nature genetics 50 (9), 1327-1334, 2018
852018
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ...
Genome research 27 (11), 1843-1858, 2017
842017
The GTEx Consortium atlas of genetic regulatory effects across human tissues
GTEx Consortium
Science 369 (6509), 1318-1330, 2020
692020
Genetic regulatory effects modified by immune activation contribute to autoimmune disease associations
S Kim-Hellmuth, M Bechheim, B Pütz, P Mohammadi, Y Nédélec, ...
Nature communications 8 (1), 1-10, 2017
682017
Dynamics of HIV latency and reactivation in a primary CD4+ T cell model
P Mohammadi, J Di Iulio, M Munoz, R Martinez, I Bartha, M Cavassini, ...
PLoS Pathog 10 (5), e1004156, 2014
652014
TiMEx: A Waiting Time Model for Mutually Exclusive Cancer Alterations
S Constantinescu, E Szczurek, P Mohammadi, J Rahnenführer, ...
Bioinformatics, 2015
482015
Local genetic effects on gene expression across 44 human tissues
F Aguet, AA Brown, S Castel, JR Davis, P Mohammadi, AV Segre, ...
BiorXiv, 074450, 2016
452016
Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change
P Mohammadi, SE Castel, AA Brown, T Lappalainen
Genome research 27 (11), 1872-1884, 2017
442017
Rare variant phasing and haplotypic expression from RNA sequencing with phASER
SE Castel, P Mohammadi, WK Chung, Y Shen, T Lappalainen
Nature communications 7 (1), 1-6, 2016
392016
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
F Yang, J Wang, BL Pierce, LS Chen, F Aguet, KG Ardlie, BB Cummings, ...
Genome research 27 (11), 1859-1871, 2017
322017
Analysis of stop-gain and frameshift variants in human innate immunity genes
A Rausell, P Mohammadi, PJ McLaren, I Bartha, I Xenarios, J Fellay, ...
PLoS Comput Biol 10 (7), e1003757, 2014
312014
Genetic effects on gene expression across human tissues
F Aguet, AA Brown, SE Castel, JR Davis, Y He, B Jo, P Mohammadi, ...
Nature, 2017
302017
Automated design of synthetic cell classifier circuits using a two-step optimization strategy
P Mohammadi, N Beerenwinkel, Y Benenson
Cell systems 4 (2), 207-218. e14, 2017
232017
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay
W Trypsteen, P Mohammadi, C Van Hecke, P Mestdagh, S Lefever, ...
Scientific reports 6, 36111, 2016
212016
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Artikelen 1–20