| Biopython: freely available Python tools for computational molecular biology and bioinformatics PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ... Bioinformatics 25 (11), 1422-1423, 2009 | 2520 | 2009 |
| The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants PJA Cock, CJ Fields, N Goto, ML Heuer, PM Rice Nucleic acids research 38 (6), 1767-1771, 2010 | 1391 | 2010 |
| Using Tablet for visual exploration of second-generation sequencing data I Milne, G Stephen, M Bayer, PJA Cock, L Pritchard, L Cardle, PD Shaw, ... Briefings in Bioinformatics 14 (2), 193-202, 2013 | 693 | 2013 |
| Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus T Kikuchi, JA Cotton, JJ Dalzell, K Hasegawa, N Kanzaki, P McVeigh, ... PLoS Pathog 7 (9), e1002219, 2011 | 318 | 2011 |
| Identification and localisation of the NB-LRR gene family within the potato genome F Jupe, L Pritchard, GJ Etherington, K MacKenzie, PJA Cock, F Wright, ... BMC genomics 13 (1), 75, 2012 | 252 | 2012 |
| Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB‐LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating … F Jupe, K Witek, W Verweij, J Śliwka, L Pritchard, GJ Etherington, ... The Plant Journal 76 (3), 530-544, 2013 | 247 | 2013 |
| The genome and life-stage specific transcriptomes of Globodera pallidaelucidate key aspects of plant parasitism by a cyst nematode JA Cotton, CJ Lilley, LM Jones, T Kikuchi, AJ Reid, P Thorpe, IJ Tsai, ... Genome biology 15 (3), R43, 2014 | 168 | 2014 |
| The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence S Eves-van den Akker, DR Laetsch, P Thorpe, CJ Lilley, EGJ Danchin, ... Genome biology 17 (1), 1-23, 2016 | 111 | 2016 |
| Bio. Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython E Talevich, BM Invergo, PJA Cock, BA Chapman BMC bioinformatics 13 (1), 209, 2012 | 105 | 2012 |
| Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology PJA Cock, BA Grüning, K Paszkiewicz, L Pritchard PeerJ 1, e167, 2013 | 102 | 2013 |
| Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida JT Jones, A Kumar, LA Pylypenko, A Thirugnanasambandam, L Castelli, ... Molecular Plant Pathology 10 (6), 815-828, 2009 | 101 | 2009 |
| NCBI BLAST+ integrated into Galaxy PJA Cock, JM Chilton, B Grüning, JE Johnson, N Soranzo Gigascience 4 (1), s13742-015-0080-7, 2015 | 89 | 2015 |
| Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA WJ McGavin, C Mitchell, PJA Cock, KM Wright, SA MacFarlane Journal of General Virology 93 (2), 430-437, 2012 | 70 | 2012 |
| Evolution of prokaryotic two-component systems: insights from comparative genomics DE Whitworth, PJA Cock Amino acids 37 (3), 459-466, 2009 | 67 | 2009 |
| Evolution of prokaryotic two-component system signaling pathways: gene fusions and fissions PJA Cock, DE Whitworth Molecular biology and evolution 24 (11), 2355-2357, 2007 | 65 | 2007 |
| Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets P Thorpe, PJA Cock, J Bos BMC genomics 17 (1), 172, 2016 | 64 | 2016 |
| Two-component signal transduction systems of the myxobacteria: structure, diversity and evolutionary relationships DE Whitworth, PJA Cock Microbiology 154 (2), 360-372, 2008 | 63 | 2008 |
| Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors RR McNally, IK Toth, PJA Cock, L Pritchard, PE Hedley, JA Morris, Y Zhao, ... Molecular plant pathology 13 (2), 160-173, 2012 | 61 | 2012 |
| Distinct circular single-stranded DNA viruses exist in different soil types B Reavy, MM Swanson, PJA Cock, L Dawson, TE Freitag, BK Singh, ... Applied and environmental microbiology 81 (12), 3934-3945, 2015 | 54 | 2015 |
| BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 5, 2014 | 54 | 2014 |
Christopher FieldsBioinformatics Roustabout, UIUCVerified email at illinois.edu
