Guillaume Holley
Guillaume Holley
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Title
Cited by
Cited by
Year
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
G Holley, R Wittler, J Stoye
Algorithms for Molecular Biology 11 (1), 1-9, 2016
692016
Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs
G Holley, P Melsted
Genome biology 21 (1), 1-20, 2020
352020
Long read sequencing of 1,817 Icelanders provides insight into the role of structural variants in human disease
D Beyter, H Ingimundardottir, HP Eggertsson, E Bjornsson, ...
BioRxiv, 848366, 2019
32*2019
Pan-genome storage and analysis techniques
T Zekic, G Holley, J Stoye
Comparative Genomics, 29-53, 2018
162018
Dynamic alignment-free and reference-free read compression
G Holley, R Wittler, J Stoye, F Hach
Journal of Computational Biology 25 (7), 825-836, 2018
152018
BlastGraph: intensive approximate pattern matching in string graphs and de-Bruijn graphs
G Holley, P Peterlongo
PSC 2012, 2012
92012
BlastFrost: fast querying of 100,000 s of bacterial genomes in Bifrost graphs
N Luhmann, G Holley, M Achtman
Genome biology 22 (1), 1-15, 2021
42021
Ratatosk: hybrid error correction of long reads enables accurate variant calling and assembly
G Holley, D Beyter, H Ingimundardottir, PL Møller, S Kristmundsdottir, ...
Genome Biology 22 (1), 1-22, 2021
32021
Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
T Krannich, WTJ White, S Niehus, G Holley, B Halldorsson, B Kehr
bioRxiv, 2021
2021
Benchmarking small variant detection with ONT reveals high performance in challenging regions
PL Møller, G Holley, D Beyter, M Nyegaard, B Halldórsson
bioRxiv, 2020
2020
Pan-genome Search and Storage
G Holley
2018
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Articles 1–11