Johannes Köster
Titolo
Citata da
Citata da
Anno
Snakemake—a scalable bioinformatics workflow engine
J Köster, S Rahmann
Bioinformatics 28 (19), 2520-2522, 2012
7842012
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
2112018
Mutational dynamics between primary and relapse neuroblastomas
A Schramm, J Köster, Y Assenov, K Althoff, M Peifer, E Mahlow, ...
Nature genetics 47 (8), 872-877, 2015
1992015
The public repository of xenografts enables discovery and randomized phase II-like trials in mice
EC Townsend, MA Murakami, A Christodoulou, AL Christie, J Köster, ...
Cancer cell 29 (4), 574-586, 2016
1532016
Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR
W Li, J Köster, H Xu, CH Chen, T Xiao, JS Liu, M Brown, XS Liu
Genome biology 16 (1), 281, 2015
1052015
MiR‐137 functions as a tumor suppressor in neuroblastoma by downregulating KDM1A
K Althoff, A Beckers, A Odersky, P Mestdagh, J Köster, IM Bray, K Bryan, ...
International journal of cancer 133 (5), 1064-1073, 2013
952013
SimLoRD: simulation of long read data
BK Stöcker, J Köster, S Rahmann
Bioinformatics 32 (17), 2704-2706, 2016
502016
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis
MI Cornwell, M Vangala, L Taing, Z Herbert, J Köster, B Li, H Sun, T Li, ...
BMC bioinformatics 19 (1), 135, 2018
312018
CRISPR-DO for genome-wide CRISPR design and optimization
J Ma, J Köster, Q Qin, S Hu, W Li, C Chen, Q Cao, J Wang, S Mei, Q Liu, ...
Bioinformatics 32 (21), 3336-3338, 2016
312016
Next‐generation RNA sequencing reveals differential expression of MYCN target genes and suggests the mTOR pathway as a promising therapy target in MYCN‐amplified neuroblastoma
A Schramm, J Köster, T Marschall, M Martin, M Schwermer, K Fielitz, ...
International journal of cancer 132 (3), E106-E115, 2013
292013
Practical computational reproducibility in the life sciences
B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ...
Cell systems 6 (6), 631-635, 2018
282018
Exon-level expression analyses identify MYCN and NTRK1 as major determinants of alternative exon usage and robustly predict primary neuroblastoma outcome
A Schramm, B Schowe, K Fielitz, M Heilmann, M Martin, T Marschall, ...
British journal of cancer 107 (8), 1409-1417, 2012
212012
Sensitivity to cdk1-inhibition is modulated by p53 status in preclinical models of embryonal tumors
M Schwermer, S Lee, J Köster, T Van Maerken, H Stephan, A Eggert, ...
Oncotarget 6 (17), 15425, 2015
142015
Assessment of rebound and relapse following ecallantide treatment for acute attacks of hereditary angioedema
JA Bernstein, EP Shea, J Koester, R Iarrobino, WE Pullman
Allergy 67 (9), 1173-1180, 2012
122012
Building and documenting workflows with python-based snakemake
J Köster, S Rahmann
German Conference on Bioinformatics 2012, 2012
122012
Full-length de novo viral quasispecies assembly through variation graph construction
JA Baaijens, B Van der Roest, J Köster, L Stougie, A Schönhuth
Bioinformatics 35 (24), 5086-5094, 2019
102019
Efficiently mining protein interaction dependencies from large text corpora
J Köster, E Zamir, S Rahmann
Integrative Biology 4 (7), 805-812, 2012
102012
Identifying transcriptional miRNA biomarkers by integrating high-throughput sequencing and real-time PCR data
S Rahmann, M Martin, JH Schulte, J Köster, T Marschall, A Schramm
Methods 59 (1), 154-163, 2013
92013
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21 (1), 1-35, 2020
82020
Rust-Bio: a fast and safe bioinformatics library
J Köster
Bioinformatics 32 (3), 444-446, 2016
82016
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
Articoli 1–20