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Daniele Capocefalo
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High-confidence assessment of functional impact of human mitochondrial non-synonymous genome variations by APOGEE
S Castellana, C Fusilli, G Mazzoccoli, T Biagini, D Capocefalo, M Carella, ...
PLoS computational biology 13 (6), e1005628, 2017
612017
Analysis of clock gene-miRNA correlation networks reveals candidate drivers in colorectal cancer
G Mazzoccoli, T Colangelo, A Panza, R Rubino, C Tiberio, O Palumbo, ...
Oncotarget 7 (29), 45444, 2016
252016
Molecular dynamics recipes for genome research
T Biagini, G Chillemi, G Mazzoccoli, A Grottesi, C Fusilli, D Capocefalo, ...
Briefings in bioinformatics 19 (5), 853-862, 2018
242018
Insights from molecular characterization of adult patients of families with multigenerational diabetes
S Pezzilli, O Ludovico, T Biagini, L Mercuri, F Alberico, E Lauricella, ...
Diabetes 67 (1), 137-145, 2018
232018
Are gaming-enabled graphic processing unit cards convenient for molecular dynamics simulation?
T Biagini, F Petrizzelli, M Truglio, R Cespa, A Barbieri, D Capocefalo, ...
Evolutionary Bioinformatics 15, 1176934319850144, 2019
202019
Systematic analysis of mouse genome reveals distinct evolutionary and functional properties among circadian and ultradian genes
S Castellana, T Mazza, D Capocefalo, N Genov, T Biagini, C Fusilli, ...
Frontiers in Physiology 9, 1178, 2018
202018
Multifaceted enrichment analysis of RNA–RNA crosstalk reveals cooperating micro-societies in human colorectal cancer
T Mazza, G Mazzoccoli, C Fusilli, D Capocefalo, A Panza, T Biagini, ...
Nucleic acids research 44 (9), 4025-4036, 2016
172016
A primary tumor gene expression signature identifies a crucial role played by tumor stroma myofibroblasts in lymph node involvement in oral squamous cell carcinoma
G Mazzoccoli, S Castellana, M Carella, O Palumbo, C Tiberio, C Fusilli, ...
Oncotarget 8 (62), 104913, 2017
142017
Pyntacle: a parallel computing-enabled framework for large-scale network biology analysis
L Parca, M Truglio, T Biagini, S Castellana, F Petrizzelli, D Capocefalo, ...
GigaScience 9 (10), giaa115, 2020
122020
Food web topology and nested keystone species complexes
D Capocefalo, J Pereira, T Mazza, F Jordán
Complexity 2018, 1-8, 2018
102018
MicroRNA co-expression networks exhibit increased complexity in pancreatic ductal compared to Vater's papilla adenocarcinoma
T Mazza, M Copetti, D Capocefalo, C Fusilli, T Biagini, M Carella, ...
Oncotarget 8 (62), 105320, 2017
92017
A multi-layered study on harmonic oscillations in mammalian genomics and proteomics
N Genov, S Castellana, F Scholkmann, D Capocefalo, M Truglio, J Rosati, ...
International journal of molecular sciences 20 (18), 4585, 2019
72019
KMT2D haploinsufficiency in Kabuki syndrome disrupts neuronal function through transcriptional and chromatin rewiring independent of H3K4-monomethylation
M Gabriele, A Vitriolo, S Cuvertino, MF Pereira, C Franconi, PL Germain, ...
bioRxiv, 2021.04. 22.440945, 2021
32021
7q11. 23 CNV alters protein synthesis and REST-mediated neuronal intrinsic excitability
M Mihailovich, PL Germain, R Shyti, D Pozzi, R Noberini, Y Liu, D Aprile, ...
bioRxiv, 2022.10. 10.511483, 2022
12022
Correction: Curation of causal interactions mediated by genes associated with autism accelerates the understanding of gene-phenotype relationships underlying neurodevelopmental …
M Iannuccelli, A Vitriolo, L Licata, P Lo Surdo, S Contino, C Cheroni, ...
Molecular Psychiatry, 1-1, 2024
2024
Reverse engineering of natural systems by graph theory
D Capocefalo
2019
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Articles 1–16