Diego di Bernardo
Diego di Bernardo
Dept. Chemical, Materials and Industrial Production Engineering, Univ. Federico II of Naples & TIGEM
Verified email at tigem.it - Homepage
Title
Cited by
Cited by
Year
Guidelines for the use and interpretation of assays for monitoring autophagy
DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif, A Abdoli, S Abel, ...
autophagy, 1-382, 2021
71162021
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
34982005
Inferring genetic networks and identifying compound mode of action via expression profiling
TS Gardner, D Di Bernardo, D Lorenz, JJ Collins
Science 301 (5629), 102-105, 2003
13542003
How to infer gene networks from expression profiles
M Bansal, V Belcastro, A Ambesi‐Impiombato, D Di Bernardo
Molecular systems biology 3 (1), 78, 2007
9852007
Discovery of drug mode of action and drug repositioning from transcriptional responses
F Iorio, R Bosotti, E Scacheri, V Belcastro, P Mithbaokar, R Ferriero, ...
Proceedings of the National Academy of Sciences 107 (33), 14621-14626, 2010
6752010
Inference of gene regulatory networks and compound mode of action from time course gene expression profiles
M Bansal, GD Gatta, D Di Bernardo
Bioinformatics 22 (7), 815-822, 2006
4692006
Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks
D di Bernardo, MJ Thompson, TS Gardner, SE Chobot, EL Eastwood, ...
Nature biotechnology 23 (3), 377-383, 2005
4612005
A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches
I Cantone, L Marucci, F Iorio, MA Ricci, V Belcastro, M Bansal, S Santini, ...
Cell 137 (1), 172-181, 2009
3852009
Id proteins synchronize stemness and anchorage to the niche of neural stem cells
F Niola, X Zhao, D Singh, A Castano, R Sullivan, M Lauria, H Nam, ...
Nature cell biology 14 (5), 477-487, 2012
1202012
MiRNAs confer phenotypic robustness to gene networks by suppressing biological noise
V Siciliano, I Garzilli, C Fracassi, S Criscuolo, S Ventre, D Di Bernardo
Nature communications 4 (1), 1-7, 2013
1102013
Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function
V Belcastro, V Siciliano, F Gregoretti, P Mithbaokar, G Dharmalingam, ...
Nucleic acids research 39 (20), 8677-8688, 2011
1052011
Robust identification of large genetic networks
D Di Bernardo, TS Gardner, JJ Collins
Biocomputing 2004, 486-497, 2003
1002003
In-vivo real-time control of protein expression from endogenous and synthetic gene networks
F Menolascina, G Fiore, E Orabona, L De Stefano, M Ferry, J Hasty, ...
PLoS Comput Biol 10 (5), e1003625, 2014
992014
Identifying network of drug mode of action by gene expression profiling
F Iorio, R Tagliaferri, D Bernardo
Journal of Computational Biology 16 (2), 241-251, 2009
982009
Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering
G Della Gatta, M Bansal, A Ambesi-Impiombato, D Antonini, C Missero, ...
Genome research 18 (6), 939-948, 2008
982008
Autophagosome–lysosome fusion triggers a lysosomal response mediated by TLR9 and controlled by OCRL
MG De Leo, L Staiano, M Vicinanza, A Luciani, A Carissimo, M Mutarelli, ...
Nature cell biology 18 (8), 839-850, 2016
912016
ddbRNA: detection of conserved secondary structures in multiple alignments
D Di Bernardo, T Down, T Hubbard
Bioinformatics 19 (13), 1606-1611, 2003
782003
High-resolution analysis of the human retina miRNome reveals isomiR variations and novel microRNAs
M Karali, M Persico, M Mutarelli, A Carissimo, M Pizzo, V Singh Marwah, ...
Nucleic acids research 44 (4), 1525-1540, 2016
732016
Analysis, design and implementation of a novel scheme for in-vivo control of synthetic gene regulatory networks
F Menolascina, M Di Bernardo, D Di Bernardo
Automatica 47 (6), 1265-1270, 2011
732011
A model of two nonlinear coupled oscillators for the study of heartbeat dynamics
D di Bernardo, MG Signorini
International journal of Bifurcation and Chaos 8 (10), 1975-1985, 1998
731998
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Articles 1–20