Marco S. Nobile

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Paolo CazzanigaAssociate Professor, University of BergamoVerified email at unibg.it
Daniela BesozziAssociate Professor, University of Milano-BicoccaVerified email at unimib.it
Giancarlo MauriProfessor of Computer Science - University of Milano-BicoccaVerified email at disco.unimib.it
Simone SpolaorPostdoc, Eindhoven University of TechnologyVerified email at tue.nl
Luca ManzoniDipartimento di Matematica e Geoscienze, Università degli Studi di TriesteVerified email at units.it
Caro FuchsUniversity of Technology EindhovenVerified email at tue.nl
Uzay KaymakProfessor of information systems in the healthcare, Eindhoven University of TechnologyVerified email at tue.nl
Gabriella PasiUniversità degli Studi di Milano BicoccaVerified email at unimib.it
Daniele Maria PapettiPh.D. student in Computer Science, Università degli Studi di Milano-BicoccaVerified email at unimib.it
Changhee HanPh.D. in Computer ScienceVerified email at nlab.ci.i.u-tokyo.ac.jp
Daniele RamazzottiDepartment of Medicine and Surgery, University of Milano-Bicocca, Milano, ItalyVerified email at unimib.it
Thalia VlachouPost-doctoral fellow, European Institute of OncologyVerified email at ieo.it
Carlos F LopezDept. of Biochemistry, Vanderbilt UniversityVerified email at vanderbilt.edu
Lilia AlberghinaEmeritus Professor of Biochemistry, University of Milano-BicoccaVerified email at unimib.it
P. Lió, Pietro Lio, P. Lio, Pietro Liò, Pie...University of CambridgeVerified email at cam.ac.uk
Leonard A. HarrisUniversity of Arkansas, Department of Biomedical EngineeringVerified email at uark.edu
Aleš ZamudaAssociate Professor, University of MariborVerified email at um.si
Renata TisiAssistant professor in Molecular Biology, University of Milano-BicoccaVerified email at unimib.it
Leonardo VanneschiNOVA IMS, Universidade Nova de LisboaVerified email at isegi.unl.pt
Hitoshi IbaUniversity of TokyoVerified email at iba.t.u-tokyo.ac.jp

Marco S. Nobile

Associate Professor, Ca' Foscari University of Venice

Verified email at unive.it - Homepage

Computational Intelligence Particle Swarm Optimization Interpretable AI Computational Systems Biology GPGPU Computing


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Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization MS Nobile, P Cazzaniga, D Besozzi, R Colombo, G Mauri, G Pasi Swarm and Evolutionary Computation 39, 70-85, 2018	159	2018
USE-Net: Incorporating Squeeze-and-Excitation blocks into U-Net for prostate zonal segmentation of multi-institutional MRI datasets L Rundo, C Han, Y Nagano, J Zhang, R Hataya, C Militello, A Tangherloni, ... Neurocomputing 365, 31-43, 2019	149	2019
Graphics Processing Units in Bioinformatics, Computational Biology and Systems Biology MS Nobile, P Cazzaniga, A Tangherloni, D Besozzi Briefings in Bioinformatics 18 (5), 870-885, 2016	137	2016
MedGA: a novel evolutionary method for image enhancement in medical imaging systems L Rundo, A Tangherloni, MS Nobile, C Militello, D Besozzi, G Mauri, ... Expert Systems with Applications 119, 387-399, 2019	79	2019
A GPU-based multi-swarm PSO method for parameter estimation in stochastic biological systems exploiting discrete-time target series MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics …, 2012	57	2012
Computational strategies for a system-level understanding of metabolism P Cazzaniga, C Damiani, D Besozzi, R Colombo, MS Nobile, D Gaglio, ... Metabolites 4 (4), 1034-1087, 2014	55	2014
GPU-accelerated simulations of mass-action kinetics models with cupSODA MS Nobile, P Cazzaniga, D Besozzi, G Mauri The Journal of Supercomputing 69 (1), 17-24, 2014	51	2014
The impact of particles initialization in PSO: parameter estimation as a case in point P Cazzaniga, MS Nobile, D Besozzi 2015 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2015	47	2015
Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design A Tangherloni, S Spolaor, P Cazzaniga, D Besozzi, L Rundo, G Mauri, ... Applied Soft Computing 81, 105494, 2019	46	2019
cuTauLeaping: A GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems MS Nobile, P Cazzaniga, D Besozzi, D Pescini, G Mauri PLoS One 9 (3), e91963, 2014	46	2014
Proactive particles in swarm optimization: a settings-free algorithm for real-parameter single objective optimization problems A Tangherloni, L Rundo, MS Nobile 2017 IEEE congress on evolutionary computation (CEC), 1940-1947, 2017	44	2017
Computational intelligence for parameter estimation of biochemical systems MS Nobile, A Tangherloni, L Rundo, S Spolaor, D Besozzi, G Mauri, ... 2018 IEEE congress on evolutionary computation (CEC), 1-8, 2018	40	2018
A novel framework for MR image segmentation and quantification by using MedGA L Rundo, A Tangherloni, P Cazzaniga, MS Nobile, G Russo, MC Gilardi, ... Computer methods and programs in biomedicine 176, 159-172, 2019	37	2019
CNN-based prostate zonal segmentation on T2-weighted MR images: A cross-dataset study L Rundo, C Han, J Zhang, R Hataya, Y Nagano, C Militello, C Ferretti, ... Neural Approaches to Dynamics of Signal Exchanges, 269-280, 2020	34	2020
Proactive particles in swarm optimization: a self-tuning algorithm based on fuzzy logic MS Nobile, G Pasi, P Cazzaniga, D Besozzi, R Colombo, G Mauri 2015 IEEE international conference on fuzzy systems (FUZZ-IEEE), 1-8, 2015	30	2015
LASSIE: simulating large-scale models of biochemical systems on GPUs A Tangherloni, MS Nobile, D Besozzi, G Mauri, P Cazzaniga BMC Bioinformatics 18 (1), 246, 2017	26	2017
GenHap: a novel computational method based on genetic algorithms for haplotype assembly A Tangherloni, S Spolaor, L Rundo, MS Nobile, P Cazzaniga, G Mauri, ... BMC Bioinformatics 20 (4), 172, 2019	25	2019
Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini Proceedings of the 14th annual conference companion on Genetic and …, 2012	22	2012
cupSODA: a CUDA-powered simulator of mass-action kinetics MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini International Conference on Parallel Computing Technologies, 344-357, 2013	21	2013
Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization MS Nobile, D Besozzi, P Cazzaniga, D Pescini, G Mauri 2013 IEEE Congress on Evolutionary Computation, 1594-1601, 2013	21	2013

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