Marco S. Nobile

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Paolo CazzanigaAssistant Professor, University of BergamoVerified email at unibg.it
Daniela BesozziAssociate Professor, University of Milano-BicoccaVerified email at unimib.it
Giancarlo MauriProfessor of Computer Science - University of Milano-BicoccaVerified email at disco.unimib.it
Simone SpolaorResearch Fellow, University of Milano-BicoccaVerified email at unimib.it
Gabriella PasiUniversità degli Studi di Milano BicoccaVerified email at unimib.it
Changhee HanPh.D. in Computer Science, LPIXEL Inc.Verified email at lpixel.net
Caro FuchsUniversity of Technology EindhovenVerified email at tue.nl
Uzay KaymakProfessor of information systems in the healthcare, Eindhoven University of TechnologyVerified email at tue.nl
Luca ManzoniDipartimento di Matematica e Geoscienze, Università degli Studi di TriesteVerified email at units.it
Daniele RamazzottiSchool of Medicine and Surgery, University of Milano-Bicocca, Milano, ItalyVerified email at unimib.it
Lilia AlberghinaEmeritus Professor of Biochemistry, University of Milano-BicoccaVerified email at unimib.it
Thalia VlachouPost-doctoral fellow, European Institute of OncologyVerified email at ieo.it
Carlos F LopezDept. of Biochemistry, Vanderbilt UniversityVerified email at vanderbilt.edu
P. Lió, Pietro Lio, P. Lio, Pietro Liò, Pie...University of CambridgeVerified email at cam.ac.uk
Leonard A. HarrisUniversity of Arkansas, Department of Biomedical EngineeringVerified email at cornell.edu
Daniele Maria PapettiPh.D. student in Computer Science, Università degli Studi di Milano-BicoccaVerified email at campus.unimib.it
Aleš ZamudaAssociate Professor, University of MariborVerified email at um.si
Hitoshi IbaUniversity of TokyoVerified email at iba.t.u-tokyo.ac.jp
Leonardo VanneschiNOVA IMS, Universidade Nova de LisboaVerified email at isegi.unl.pt
Luca De GioiabicoccaVerified email at unimib.it

Marco S. Nobile

Assistant Professor, TU/e - Eindhoven University of Technology

Verified email at tue.nl - Homepage

Computational Intelligence Particle Swarm Optimization Interpretable AI Computational Biology GPGPU Computing


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Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization MS Nobile, P Cazzaniga, D Besozzi, R Colombo, G Mauri, G Pasi Swarm and Evolutionary Computation 39, 70-85, 2018	105	2018
Graphics Processing Units in Bioinformatics, Computational Biology and Systems Biology MS Nobile, P Cazzaniga, A Tangherloni, D Besozzi Briefings in Bioinformatics 18 (5), 870-885, 2016	96	2016
USE-Net: Incorporating Squeeze-and-Excitation blocks into U-Net for prostate zonal segmentation of multi-institutional MRI datasets L Rundo, C Han, Y Nagano, J Zhang, R Hataya, C Militello, A Tangherloni, ... Neurocomputing 365, 31-43, 2019	58	2019
A GPU-based multi-swarm PSO method for parameter estimation in stochastic biological systems exploiting discrete-time target series MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics …, 2012	54	2012
MedGA: a novel evolutionary method for image enhancement in medical imaging systems L Rundo, A Tangherloni, MS Nobile, C Militello, D Besozzi, G Mauri, ... Expert Systems with Applications 119, 387-399, 2019	52	2019
Computational strategies for a system-level understanding of metabolism P Cazzaniga, C Damiani, D Besozzi, R Colombo, MS Nobile, D Gaglio, ... Metabolites 4 (4), 1034-1087, 2014	50	2014
GPU-accelerated simulations of mass-action kinetics models with cupSODA MS Nobile, P Cazzaniga, D Besozzi, G Mauri The Journal of Supercomputing 69 (1), 17-24, 2014	43	2014
cuTauLeaping: A GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems MS Nobile, P Cazzaniga, D Besozzi, D Pescini, G Mauri PLoS One 9 (3), e91963, 2014	37	2014
The impact of particles initialization in PSO: parameter estimation as a case in point P Cazzaniga, MS Nobile, D Besozzi 2015 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2015	31	2015
Proactive particles in swarm optimization: A settings-free algorithm for real-parameter single objective optimization problems A Tangherloni, L Rundo, MS Nobile 2017 IEEE Congress on Evolutionary Computation (CEC), 1940-1947, 2017	28	2017
Proactive particles in swarm optimization: a self-tuning algorithm based on fuzzy logic MS Nobile, G Pasi, P Cazzaniga, D Besozzi, R Colombo, G Mauri 2015 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), 1-8, 2015	25	2015
Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design A Tangherloni, S Spolaor, P Cazzaniga, D Besozzi, L Rundo, G Mauri, ... Applied Soft Computing 81, 105494, 2019	23	2019
A novel framework for MR image segmentation and quantification by using MedGA L Rundo, A Tangherloni, P Cazzaniga, MS Nobile, G Russo, MC Gilardi, ... Computer methods and programs in biomedicine 176, 159-172, 2019	23	2019
Computational intelligence for parameter estimation of biochemical systems MS Nobile, A Tangherloni, L Rundo, S Spolaor, D Besozzi, G Mauri, ... 2018 IEEE Congress on Evolutionary Computation (CEC), 1-8, 2018	23	2018
cupSODA: a CUDA-powered simulator of mass-action kinetics MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini International Conference on Parallel Computing Technologies, 344-357, 2013	21	2013
Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini Proceedings of the 14th annual conference companion on Genetic and …, 2012	21	2012
LASSIE: simulating large-scale models of biochemical systems on GPUs A Tangherloni, MS Nobile, D Besozzi, G Mauri, P Cazzaniga BMC Bioinformatics 18 (1), 246, 2017	20	2017
Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization MS Nobile, D Besozzi, P Cazzaniga, D Pescini, G Mauri 2013 IEEE Congress on Evolutionary Computation, 1594-1601, 2013	19	2013
GenHap: a novel computational method based on genetic algorithms for haplotype assembly A Tangherloni, S Spolaor, L Rundo, MS Nobile, P Cazzaniga, G Mauri, ... BMC Bioinformatics 20 (4), 172, 2019	18	2019
Quantitative biology: theory, computational methods, and models B Munsky, WS Hlavacek, LS Tsimring MIT Press, 2018	16	2018

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