| Graphics Processing Units in Bioinformatics, Computational Biology and Systems Biology MS Nobile, P Cazzaniga, A Tangherloni, D Besozzi Briefings in Bioinformatics 18 (5), 870-885, 2016 | 78 | 2016 |
| Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization MS Nobile, P Cazzaniga, D Besozzi, R Colombo, G Mauri, G Pasi Swarm and Evolutionary Computation 39, 70-85, 2018 | 76 | 2018 |
| A GPU-based multi-swarm PSO method for parameter estimation in stochastic biological systems exploiting discrete-time target series MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics …, 2012 | 53 | 2012 |
| MedGA: a novel evolutionary method for image enhancement in medical imaging systems L Rundo, A Tangherloni, MS Nobile, C Militello, D Besozzi, G Mauri, ... Expert Systems with Applications 119, 387-399, 2019 | 44 | 2019 |
| Computational strategies for a system-level understanding of metabolism P Cazzaniga, C Damiani, D Besozzi, R Colombo, MS Nobile, D Gaglio, ... Metabolites 4 (4), 1034-1087, 2014 | 44 | 2014 |
| GPU-accelerated simulations of mass-action kinetics models with cupSODA MS Nobile, P Cazzaniga, D Besozzi, G Mauri The Journal of Supercomputing 69 (1), 17-24, 2014 | 40 | 2014 |
| USE-Net: Incorporating Squeeze-and-Excitation blocks into U-Net for prostate zonal segmentation of multi-institutional MRI datasets L Rundo, C Han, Y Nagano, J Zhang, R Hataya, C Militello, A Tangherloni, ... Neurocomputing 365, 31-43, 2019 | 35 | 2019 |
| cuTauLeaping: A GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems MS Nobile, P Cazzaniga, D Besozzi, D Pescini, G Mauri PLoS One 9 (3), e91963, 2014 | 32 | 2014 |
| The impact of particles initialization in PSO: parameter estimation as a case in point P Cazzaniga, MS Nobile, D Besozzi 2015 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2015 | 26 | 2015 |
| Proactive particles in swarm optimization: a self-tuning algorithm based on fuzzy logic MS Nobile, G Pasi, P Cazzaniga, D Besozzi, R Colombo, G Mauri 2015 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), 1-8, 2015 | 26 | 2015 |
| Proactive particles in swarm optimization: A settings-free algorithm for real-parameter single objective optimization problems A Tangherloni, L Rundo, MS Nobile 2017 IEEE Congress on Evolutionary Computation (CEC), 1940-1947, 2017 | 25 | 2017 |
| Computational intelligence for parameter estimation of biochemical systems MS Nobile, A Tangherloni, L Rundo, S Spolaor, D Besozzi, G Mauri, ... 2018 IEEE Congress on Evolutionary Computation (CEC), 1-8, 2018 | 20 | 2018 |
| cupSODA: a CUDA-powered simulator of mass-action kinetics MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini International Conference on Parallel Computing Technologies, 344-357, 2013 | 19 | 2013 |
| Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization MS Nobile, D Besozzi, P Cazzaniga, D Pescini, G Mauri 2013 IEEE Congress on Evolutionary Computation, 1594-1601, 2013 | 19 | 2013 |
| Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini Proceedings of the 14th annual conference companion on Genetic and …, 2012 | 19 | 2012 |
| Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design A Tangherloni, S Spolaor, P Cazzaniga, D Besozzi, L Rundo, G Mauri, ... Applied Soft Computing 81, 105494, 2019 | 15 | 2019 |
| LASSIE: simulating large-scale models of biochemical systems on GPUs A Tangherloni, MS Nobile, D Besozzi, G Mauri, P Cazzaniga BMC Bioinformatics 18 (1), 246, 2017 | 15 | 2017 |
| GenHap: a novel computational method based on genetic algorithms for haplotype assembly A Tangherloni, S Spolaor, L Rundo, MS Nobile, P Cazzaniga, G Mauri, ... BMC Bioinformatics 20 (4), 172, 2019 | 13 | 2019 |
| Reboot strategies in particle swarm optimization and their impact on parameter estimation of biochemical systems S Spolaor, A Tangherloni, L Rundo, MS Nobile, P Cazzaniga 2017 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2017 | 12 | 2017 |
| GPU-powered model analysis with PySB/cupSODA LA Harris, MS Nobile, JC Pino, ALR Lubbock, D Besozzi, G Mauri, ... Bioinformatics 33 (21), 3492-3494, 2017 | 10 | 2017 |
Paolo CazzanigaAssistant Professor, University of BergamoVerified email at unibg.it
