Marco S. Nobile
Title
Cited by
Cited by
Year
Graphics Processing Units in Bioinformatics, Computational Biology and Systems Biology
MS Nobile, P Cazzaniga, A Tangherloni, D Besozzi
Briefings in Bioinformatics 18 (5), 870-885, 2016
712016
Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization
MS Nobile, P Cazzaniga, D Besozzi, R Colombo, G Mauri, G Pasi
Swarm and Evolutionary Computation 39, 70-85, 2018
622018
A GPU-based multi-swarm PSO method for parameter estimation in stochastic biological systems exploiting discrete-time target series
MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini
Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics …, 2012
532012
Computational strategies for a system-level understanding of metabolism
P Cazzaniga, C Damiani, D Besozzi, R Colombo, MS Nobile, D Gaglio, ...
Metabolites 4 (4), 1034-1087, 2014
422014
GPU-accelerated simulations of mass-action kinetics models with cupSODA
MS Nobile, P Cazzaniga, D Besozzi, G Mauri
The Journal of Supercomputing 69 (1), 17-24, 2014
402014
MedGA: a novel evolutionary method for image enhancement in medical imaging systems
L Rundo, A Tangherloni, MS Nobile, C Militello, D Besozzi, G Mauri, ...
Expert Systems with Applications 119, 387-399, 2019
312019
cuTauLeaping: A GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems
MS Nobile, P Cazzaniga, D Besozzi, D Pescini, G Mauri
PLoS One 9 (3), 2014
302014
The impact of particles initialization in PSO: parameter estimation as a case in point
P Cazzaniga, MS Nobile, D Besozzi
2015 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2015
252015
Proactive particles in swarm optimization: a self-tuning algorithm based on fuzzy logic
MS Nobile, G Pasi, P Cazzaniga, D Besozzi, R Colombo, G Mauri
2015 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), 1-8, 2015
242015
Computational intelligence for parameter estimation of biochemical systems
MS Nobile, A Tangherloni, L Rundo, S Spolaor, D Besozzi, G Mauri, ...
2018 IEEE Congress on Evolutionary Computation (CEC), 1-8, 2018
202018
Proactive particles in swarm optimization: A settings-free algorithm for real-parameter single objective optimization problems
A Tangherloni, L Rundo, MS Nobile
2017 IEEE Congress on Evolutionary Computation (CEC), 1940-1947, 2017
202017
cupSODA: a CUDA-powered simulator of mass-action kinetics
MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini
International Conference on Parallel Computing Technologies, 344-357, 2013
192013
USE-Net: Incorporating Squeeze-and-Excitation blocks into U-Net for prostate zonal segmentation of multi-institutional MRI datasets
L Rundo, C Han, Y Nagano, J Zhang, R Hataya, C Militello, A Tangherloni, ...
Neurocomputing 365, 31-43, 2019
182019
Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization
MS Nobile, D Besozzi, P Cazzaniga, D Pescini, G Mauri
2013 IEEE Congress on Evolutionary Computation, 1594-1601, 2013
182013
Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs
MS Nobile, D Besozzi, P Cazzaniga, G Mauri, D Pescini
Proceedings of the 14th annual conference companion on Genetic and …, 2012
172012
LASSIE: simulating large-scale models of biochemical systems on GPUs
A Tangherloni, MS Nobile, D Besozzi, G Mauri, P Cazzaniga
BMC Bioinformatics 18 (1), 246, 2017
142017
Reboot strategies in particle swarm optimization and their impact on parameter estimation of biochemical systems
S Spolaor, A Tangherloni, L Rundo, MS Nobile, P Cazzaniga
2017 IEEE Conference on Computational Intelligence in Bioinformatics and …, 2017
122017
GenHap: a novel computational method based on genetic algorithms for haplotype assembly
A Tangherloni, S Spolaor, L Rundo, MS Nobile, P Cazzaniga, G Mauri, ...
BMC bioinformatics 20 (4), 172, 2019
92019
The foundation of Evolutionary Petri Nets
MS Nobile, D Besozzi, P Cazzaniga, G Mauri
4th International Workshop on Biological Processes & Petri Nets (BioPPN 2013 …, 2013
92013
Biochemical parameter estimation vs. benchmark functions: a comparative study of optimization performance and representation design
A Tangherloni, S Spolaor, P Cazzaniga, D Besozzi, L Rundo, G Mauri, ...
Applied Soft Computing 81, 105494, 2019
82019
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