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James Fleming
James Fleming
Postdoctoral Researcher, Oslo University Natural History Museum
Verified email at nhm.uio.no
Title
Cited by
Cited by
Year
Making sense of social prescribing
MJ Polley, J Fleming, T Anfilogoff, A Carpenter
University of Westminster, 2017
2072017
Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data
JE O'Reilly, MN Puttick, L Parry, AR Tanner, JE Tarver, J Fleming, ...
Biology letters 12 (4), 20160081, 2016
2052016
Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data
MN Puttick, JE O'Reilly, AR Tanner, JF Fleming, J Clark, L Holloway, ...
Proceedings of the Royal Society B: Biological Sciences 284 (1846), 20162290, 2017
1352017
Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling
J Lozano-Fernandez, M Giacomelli, JF Fleming, A Chen, J Vinther, ...
Genome Biology and Evolution 11 (8), 2055-2070, 2019
1002019
Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al.
MN Puttick, JE O'Reilly, D Oakley, AR Tanner, JF Fleming, J Clark, ...
Proceedings of the Royal Society B: Biological Sciences 284 (1864), 20171636, 2017
272017
Molecular palaeontology illuminates the evolution of ecdysozoan vision
JF Fleming, RM Kristensen, MV Sørensen, TYS Park, K Arakawa, ...
Proceedings of the Royal Society B 285 (1892), 20182180, 2018
242018
The Ediacaran origin of Ecdysozoa: integrating fossil and phylogenomic data
RJ Howard, M Giacomelli, J Lozano-Fernandez, GD Edgecombe, ...
Journal of the Geological Society 179 (4), jgs2021-107, 2022
232022
A novel approach to investigate the effect of tree reconstruction artifacts in single-gene analysis clarifies opsin evolution in nonbilaterian metazoans
JF Fleming, R Feuda, NW Roberts, D Pisani
Genome biology and evolution 12 (2), 3906-3916, 2020
202020
Systematics of tardigrada: A reanalysis of tardigrade taxonomy with specific reference to Guil et al.(2019)
JF Fleming, K Arakawa
Zoologica scripta 50 (3), 376-382, 2021
142021
Comprehensive transcriptome sequencing of Tanaidacea with proteomic evidences for their silk
K Kakui, JF Fleming, M Mori, Y Fujiwara, K Arakawa
Genome biology and evolution 13 (12), evab281, 2021
122021
Hagfish genome illuminates vertebrate whole genome duplications and their evolutionary consequences
D Yu, Y Ren, M Uesaka, AJS Beavan, M Muffato, J Shen, Y Li, I Sato, ...
BioRxiv, 2023.04. 08.536076, 2023
92023
Eye-transcriptome and genome-wide sequencing for Scolecophidia: implications for inferring the visual system of the ancestral snake
DJ Gower, JF Fleming, D Pisani, FJ Vonk, HMI Kerkkamp, L Peichl, ...
Genome biology and evolution 13 (12), evab253, 2021
72021
Identifying and addressing methodological incongruence in phylogenomics: A review
JF Fleming, A Valero‐Gracia, TH Struck
Evolutionary Applications 16 (6), 1087-1104, 2023
62023
nRCFV: a new, dataset-size-independent metric to quantify compositional heterogeneity in nucleotide and amino acid datasets
JF Fleming, TH Struck
BMC bioinformatics 24 (1), 145, 2023
52023
Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences
D Yu, Y Ren, M Uesaka, AJS Beavan, M Muffato, J Shen, Y Li, I Sato, ...
Nature Ecology & Evolution, 1-17, 2024
32024
The wealth of shared resources: improving molecular taxonomy using eDNA and public databases
JF Fleming
Zoologica Scripta 52 (3), 226-234, 2023
32023
New Tardigrade opsins and differential expression analyses show ontogenic variation in light perception
JF Fleming, D Pisani, K Arakawa
Genome biology and evolution 13 (8), evab164, 2021
32021
The Evolution of Temperature and Desiccation-Related Protein Families in Tardigrada Reveals a Complex Acquisition of Extremotolerance
JF Fleming, D Pisani, K Arakawa
Genome Biology and Evolution 16 (1), evad217, 2024
22024
Scoutknife: A naïve, whole genome informed phylogenetic robusticity metric
J Fleming, PM Eriksen, TH Struck
F1000Research 12, 945, 2023
2023
Hagfish genome illuminates vertebrate whole genome duplications and their evolutionary consequences
J Pascual-Anaya, D Yu, Y Ren, M Uesaka, A Beavan, M Muffato, J Shen, ...
2023
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