K IS S PLICE: de-novo calling alternative splicing events from RNA-seq data GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ...
BMC bioinformatics 13 (6), S5, 2012
93 2012 Optimal listing of cycles and st-paths in undirected graphs E Birmelé, R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto
Proceedings of the twenty-fourth annual ACM-SIAM symposium on Discrete …, 2013
60 2013 Using cascading Bloom filters to improve the memory usage for de Brujin graphs K Salikhov, G Sacomoto, G Kucherov
Algorithms for Molecular Biology 9 (1), 2, 2014
52 2014 Using cascading Bloom filters to improve the memory usage for de Brujin graphs K Salikhov, G Sacomoto, G Kucherov
International Workshop on Algorithms in Bioinformatics, 364-376, 2013
51 2013 Lossless filter for multiple repeats with bounded edit distance P Peterlongo, GAT Sacomoto, AP do Lago, N Pisanti, MF Sagot
Algorithms for Molecular Biology 4 (1), 3, 2009
24 2009 Efficient bubble enumeration in directed graphs E Birmelé, P Crescenzi, R Ferreira, R Grossi, V Lacroix, A Marino, ...
International Symposium on String Processing and Information Retrieval, 118-129, 2012
17 2012 A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data G Sacomoto, V Lacroix, MF Sagot
International Workshop on Algorithms in Bioinformatics, 99-111, 2013
10 2013 Computing and Listing st -Paths in Public Transportation Networks K Böhmová, L Häfliger, M Mihalák, T Pröger, G Sacomoto, MF Sagot
Theory of Computing Systems 62 (3), 600-621, 2018
9 2018 Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
Scientific reports 8 (1), 4307, 2018
8 2018 Navigating in a sea of repeats in rna-seq without drowning G Sacomoto, B Sinaimeri, C Marchet, V Miele, MF Sagot, V Lacroix
International Workshop on Algorithms in Bioinformatics, 82-96, 2014
8 2014 Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ...
Algorithms for molecular biology 12 (1), 2, 2017
7 2017 Amortized R Ferreira, R Grossi, R Rizzi, G Sacomoto, MF Sagot
European Symposium on Algorithms, 418-429, 2014
7 2014 Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads Y Le Bras, O Collin, C Monjeaud, V Lacroix, É Rivals, C Lemaitre, V Miele, ...
GigaScience 5 (1), s13742-015-0105-2, 2016
6 2016 On bubble generators in directed graphs V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
International Workshop on Graph-Theoretic Concepts in Computer Science, 18-31, 2017
4 2017 Efficiently listing bounded length st-paths R Rizzi, G Sacomoto, MF Sagot
International Workshop on Combinatorial Algorithms, 318-329, 2014
4 2014 Superstring Graph: a new approach for genome assembly B Cazaux, G Sacomoto, E Rivals
International Conference on Algorithmic Applications in Management, 39-52, 2016
2 2016 Annotation and differential analysis of alternative splicing using de novo assembly of RNAseq data C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
bioRxiv, 074807, 2016
2 2016 Efficient algorithms for de novo assembly of alternative splicing events from RNA-seq data G Sacomoto
arXiv preprint arXiv:1406.6047, 2014
2 2014 Optimal Listing of Cycles and st-Paths in Undirected Graphs R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto
arXiv preprint arXiv:1205.2766, 2012
2 2012 On Bubble Generators in Directed Graphs V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
Algorithmica, 1-17, 2019
1 2019 
Marie-France SagotDirector of Research, InriaEmail verificata su inria.fr
