Gustavo Sacomoto
Gustavo Sacomoto
Post-Doc Researcher INRIA (Lyon, France)
Email verificata su inria.fr
TitoloCitata daAnno
K IS S PLICE: de-novo calling alternative splicing events from RNA-seq data
GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ...
BMC bioinformatics 13 (6), S5, 2012
932012
Optimal listing of cycles and st-paths in undirected graphs
E BirmelÚ, R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto
Proceedings of the twenty-fourth annual ACM-SIAM symposium on Discreteá…, 2013
602013
Using cascading Bloom filters to improve the memory usage for de Brujin graphs
K Salikhov, G Sacomoto, G Kucherov
Algorithms for Molecular Biology 9 (1), 2, 2014
522014
Using cascading Bloom filters to improve the memory usage for de Brujin graphs
K Salikhov, G Sacomoto, G Kucherov
International Workshop on Algorithms in Bioinformatics, 364-376, 2013
512013
Lossless filter for multiple repeats with bounded edit distance
P Peterlongo, GAT Sacomoto, AP do Lago, N Pisanti, MF Sagot
Algorithms for Molecular Biology 4 (1), 3, 2009
242009
Efficient bubble enumeration in directed graphs
E BirmelÚ, P Crescenzi, R Ferreira, R Grossi, V Lacroix, A Marino, ...
International Symposium on String Processing and Information Retrieval, 118-129, 2012
172012
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data
G Sacomoto, V Lacroix, MF Sagot
International Workshop on Algorithms in Bioinformatics, 99-111, 2013
102013
Computing and Listing st-Paths in Public Transportation Networks
K B÷hmovß, L Hńfliger, M Mihalßk, T Pr÷ger, G Sacomoto, MF Sagot
Theory of Computing Systems 62 (3), 600-621, 2018
92018
Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data
C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
Scientific reports 8 (1), 4307, 2018
82018
Navigating in a sea of repeats in rna-seq without drowning
G Sacomoto, B Sinaimeri, C Marchet, V Miele, MF Sagot, V Lacroix
International Workshop on Algorithms in Bioinformatics, 82-96, 2014
82014
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads
L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ...
Algorithms for molecular biology 12 (1), 2, 2017
72017
Amortized -Delay Algorithm for Listing Chordless Cycles in Undirected Graphs
R Ferreira, R Grossi, R Rizzi, G Sacomoto, MF Sagot
European Symposium on Algorithms, 418-429, 2014
72014
Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Y Le Bras, O Collin, C Monjeaud, V Lacroix, ╔ Rivals, C Lemaitre, V Miele, ...
GigaScience 5 (1), s13742-015-0105-2, 2016
62016
On bubble generators in directed graphs
V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
International Workshop on Graph-Theoretic Concepts in Computer Science, 18-31, 2017
42017
Efficiently listing bounded length st-paths
R Rizzi, G Sacomoto, MF Sagot
International Workshop on Combinatorial Algorithms, 318-329, 2014
42014
Superstring Graph: a new approach for genome assembly
B Cazaux, G Sacomoto, E Rivals
International Conference on Algorithmic Applications in Management, 39-52, 2016
22016
Annotation and differential analysis of alternative splicing using de novo assembly of RNAseq data
C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
bioRxiv, 074807, 2016
22016
Efficient algorithms for de novo assembly of alternative splicing events from RNA-seq data
G Sacomoto
arXiv preprint arXiv:1406.6047, 2014
22014
Optimal Listing of Cycles and st-Paths in Undirected Graphs
R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto
arXiv preprint arXiv:1205.2766, 2012
22012
On Bubble Generators in Directed Graphs
V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
Algorithmica, 1-17, 2019
12019
Il sistema al momento non pu˛ eseguire l'operazione. Riprova pi¨ tardi.
Articoli 1–20