KIS SPLICE : de-novo calling alternative splicing events from RNA-seq data GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ...
BMC bioinformatics 13 (S6), S5, 2012
102 2012 Optimal listing of cycles and st-paths in undirected graphs E Birmelé, R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto
Proceedings of the twenty-fourth annual ACM-SIAM symposium on Discrete …, 2013
65 2013 Using cascading Bloom filters to improve the memory usage for de Brujin graphs K Salikhov, G Sacomoto, G Kucherov
Algorithms for Molecular Biology 9 (1), 2, 2014
56 2014 Using cascading Bloom filters to improve the memory usage for de Brujin graphs K Salikhov, G Sacomoto, G Kucherov
International Workshop on Algorithms in Bioinformatics, 364-376, 2013
54 2013 Lossless filter for multiple repeats with bounded edit distance P Peterlongo, GAT Sacomoto, AP do Lago, N Pisanti, MF Sagot
Algorithms for Molecular Biology 4 (1), 3, 2009
27 2009 Efficient bubble enumeration in directed graphs E Birmelé, P Crescenzi, R Ferreira, R Grossi, V Lacroix, A Marino, ...
International Symposium on String Processing and Information Retrieval, 118-129, 2012
19 2012 5th International Conference on Practical Applications of Computational Biology & Bioinformatics MP Rocha, JMC Rodríguez, FF Riverola, A Valencia
Springer Science & Business Media, 2011
17 * 2011 Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
Scientific reports 8 (1), 1-13, 2018
15 2018 Computing and Listing st -Paths in Public Transportation Networks K Böhmová, L Häfliger, M Mihalák, T Pröger, G Sacomoto, MF Sagot
Theory of Computing Systems 62 (3), 600-621, 2018
12 2018 A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data G Sacomoto, V Lacroix, MF Sagot
International Workshop on Algorithms in Bioinformatics, 99-111, 2013
11 2013 Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ...
Algorithms for molecular biology 12 (1), 1-19, 2017
9 2017 Efficiently listing bounded length st-paths R Rizzi, G Sacomoto, MF Sagot
International Workshop on Combinatorial Algorithms, 318-329, 2014
7 2014 Amortized R Ferreira, R Grossi, R Rizzi, G Sacomoto, MF Sagot
European Symposium on Algorithms, 418-429, 2014
7 2014 On bubble generators in directed graphs V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
International Workshop on Graph-Theoretic Concepts in Computer Science, 18-31, 2017
6 2017 Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads Y Le Bras, O Collin, C Monjeaud, V Lacroix, É Rivals, C Lemaitre, V Miele, ...
GigaScience 5 (1), s13742-015-0105-2, 2016
6 2016 Navigating in a sea of repeats in rna-seq without drowning G Sacomoto, B Sinaimeri, C Marchet, V Miele, MF Sagot, V Lacroix
International Workshop on Algorithms in Bioinformatics, 82-96, 2014
6 2014 Annotation and differential analysis of alternative splicing using de novo assembly of RNAseq data C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
2 2017 Superstring Graph: a new approach for genome assembly B Cazaux, G Sacomoto, E Rivals
International Conference on Algorithmic Applications in Management, 39-52, 2016
2 2016 Efficient algorithms for de novo assembly of alternative splicing events from RNA-seq data G Sacomoto
arXiv preprint arXiv:1406.6047, 2014
2 2014 Optimal Listing of Cycles and st-Paths in Undirected Graphs R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto
arXiv preprint arXiv:1205.2766, 2012
2 2012 
Marie-France SagotDirector of Research, InriaEmail verificata su inria.fr
