| HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ... Molecular biology and evolution 37 (1), 295-299, 2020 | 344 | 2020 |
| Structural study of interaction between brinzolamide and dorzolamide inhibition of human carbonic anhydrases MA Pinard, CD Boone, BD Rife, CT Supuran, R McKenna Bioorganic & medicinal chemistry 21 (22), 7210-7215, 2013 | 115 | 2013 |
| Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable C Mavian, SK Pond, S Marini, BR Magalis, AM Vandamme, S Dellicour, ... Proceedings of the National Academy of Sciences 117 (23), 12522-12523, 2020 | 82 | 2020 |
| Emergence of recombinant Mayaro virus strains from the Amazon basin C Mavian, BD Rife, JJ Dollar, E Cella, M Ciccozzi, MCF Prosperi, ... Scientific reports 7 (1), 8718, 2017 | 82 | 2017 |
| Neutral theory and rapidly evolving viral pathogens SDW Frost, BR Magalis, SL Kosakovsky Pond Molecular biology and evolution 35 (6), 1348-1354, 2018 | 59 | 2018 |
| Evolution of viral genomes: interplay between selection, recombination, and other forces SJ Spielman, S Weaver, SD Shank, BR Magalis, M Li, ... Evolutionary genomics: statistical and computational methods, 427-468, 2019 | 54 | 2019 |
| Phylodynamic applications in 21st century global infectious disease research BD Rife, C Mavian, X Chen, M Ciccozzi, M Salemi, J Min, MCF Prosperi Global health research and policy 2, 1-10, 2017 | 51 | 2017 |
| Phylogenetics and phyloanatomy of HIV/SIV intra-host compartments and reservoirs: the key role of the central nervous system M Salemi, B Rife Current HIV research 14 (2), 110-120, 2016 | 43 | 2016 |
| Impact of spatial dispersion, evolution and selection on Ebola Zaire Virus epidemic waves T Azarian, A Lo Presti, M Giovanetti, E Cella, B Rife, A Lai, G Zehender, ... Scientific reports 5 (1), 10170, 2015 | 39 | 2015 |
| Contrast-FEL—a test for differences in selective pressures at individual sites among clades and sets of branches SL Kosakovsky Pond, SR Wisotsky, A Escalante, BR Magalis, S Weaver Molecular biology and evolution 38 (3), 1184-1198, 2021 | 35 | 2021 |
| Solution structure of the HIV-1 intron splicing silencer and its interactions with the UP1 domain of heterogeneous nuclear ribonucleoprotein (hnRNP) A1 N Jain, CE Morgan, BD Rife, M Salemi, BS Tolbert Journal of Biological Chemistry 291 (5), 2331-2344, 2016 | 32 | 2016 |
| SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in Italy M Giovanetti, E Cella, F Benedetti, B Rife Magalis, V Fonseca, S Fabris, ... Communications biology 4 (1), 489, 2021 | 31 | 2021 |
| Thermodynamic and phylogenetic insights into hnRNP A1 recognition of the HIV-1 exon splicing silencer 3 element C Rollins, JD Levengood, BD Rife, M Salemi, BS Tolbert Biochemistry 53 (13), 2172-2184, 2014 | 30 | 2014 |
| Tracking the Emergence of Host-Specific Simian Immunodeficiency Virus env and nef Populations Reveals nef Early Adaptation and Convergent Evolution in … SL Lamers, DJ Nolan, BD Rife, GB Fogel, MS McGrath, TH Burdo, ... Journal of virology 89 (16), 8484-8496, 2015 | 19 | 2015 |
| Identification of conserved, primary sequence motifs that direct retrovirus RNA fate G Singh, BD Rife, B Seufzer, M Salemi, A Rendahl, K Boris-Lawrie Nucleic Acids Research 46 (14), 7366-7378, 2018 | 17 | 2018 |
| On the early dynamics and spread of HIV-1 B Rife, M Salemi Trends in microbiology 23 (1), 3-4, 2015 | 17 | 2015 |
| Rapid emergence and spread of severe acute respiratory syndrome coronavirus 2 gamma (p. 1) variant in Haiti MS Tagliamonte, C Mavian, K Zainabadi, MN Cash, JA Lednicky, ... Clinical Infectious Diseases 74 (11), 2057-2060, 2022 | 16 | 2022 |
| Evolution of neuroadaptation in the periphery and purifying selection in the brain contribute to compartmentalization of simian immunodeficiency virus (SIV) in the brains of … BD Rife, DJ Nolan, SL Lamers, P Autissier, T Burdo, KC Williams, ... Journal of Virology 90 (13), 6112-6126, 2016 | 15 | 2016 |
| Employing molecular phylodynamic methods to identify and forecast HIV transmission clusters in public health settings: A qualitative study SN Rich, VL Richards, CN Mavian, WM Switzer, B Rife Magalis, ... Viruses 12 (9), 921, 2020 | 13 | 2020 |
| Origin and dissemination of hepatitis B virus genotype C in East Asia revealed by phylodynamic analysis and historical correlates SYC Lin, BR Magalis, M Salemi, HF Liu Journal of viral hepatitis 26 (1), 145-154, 2019 | 10 | 2019 |
Marco SalemiHolloway Chair and Professor of Experimental PathologyEmail verificata su pathology.ufl.edu
