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Devon P Ryan
Devon P Ryan
Genedata AG
Verified email at dpryan.com
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Year
deepTools2: a next generation web server for deep-sequencing data analysis
F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ...
Nucleic acids research 44 (Web Server issue), W160, 2016
55792016
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
8612018
Rapamycin extends murine lifespan but has limited effects on aging
F Neff, D Flores-Dominguez, DP Ryan, M Horsch, S Schröder, T Adler, ...
The Journal of clinical investigation 123 (8), 3272-3291, 2013
3992013
Mutations in potassium channel Kir2. 6 cause susceptibility to thyrotoxic hypokalemic periodic paralysis
DP Ryan, MRD da Silva, TW Soong, B Fontaine, MR Donaldson, ...
Cell 140 (1), 88-98, 2010
3612010
Community-driven data analysis training for biology
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Cell systems 6 (6), 752-758. e1, 2018
1822018
Mechanisms of RNA-induced toxicity in CAG repeat disorders
R Nalavade, N Griesche, DP Ryan, S Hildebrand, S Krauss
Cell death & disease 4 (8), e752-e752, 2013
1782013
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis
V Bhardwaj, S Heyne, K Sikora, L Rabbani, M Rauer, F Kilpert, AS Richter, ...
Bioinformatics 35 (22), 4757-4759, 2019
1282019
Epigenetic alterations in longevity regulators, reduced life span, and exacerbated aging-related pathology in old father offspring mice
K Xie, DP Ryan, BL Pearson, KS Henzel, F Neff, RO Vidal, M Hennion, ...
Proceedings of the National Academy of Sciences 115 (10), E2348-E2357, 2018
1222018
The anti-diabetic drug metformin reduces BACE1 protein level by interfering with the MID1 complex
MM Hettich, F Matthes, DP Ryan, N Griesche, S Schröder, S Dorn, ...
PloS one 9 (7), e102420, 2014
1072014
Episodic neurological channelopathies
DP Ryan, LJ Ptáček
Neuron 68 (2), 282-292, 2010
1062010
Every-other-day feeding extends lifespan but fails to delay many symptoms of aging in mice
K Xie, F Neff, A Markert, J Rozman, JA Aguilar-Pimentel, OV Amarie, ...
Nature communications 8 (1), 155, 2017
1042017
.(2016) deepTools2: a next generation web server for deepsequencing data analysis
F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter
Nucleic Acids Res 44, W160-W165, 0
84
A paternal methyl donor-rich diet altered cognitive and neural functions in offspring mice
DP Ryan, KS Henzel, BL Pearson, ME Siwek, A Papazoglou, L Guo, ...
Molecular psychiatry 23 (5), 1345-1355, 2018
662018
Complete loss of H3K9 methylation dissolves mouse heterochromatin organization
T Montavon, N Shukeir, G Erikson, B Engist, M Onishi-Seebacher, D Ryan, ...
Nature communications 12 (1), 4359, 2021
532021
Adult‐onset fluoxetine treatment does not improve behavioral impairments and may have adverse effects on the Ts65Dn mouse model of Down syndrome
M Heinen, MM Hettich, DP Ryan, S Schnell, K Paesler, D Ehninger
Neural Plasticity 2012 (1), 467251, 2012
512012
Limited Effects of an eIF2αS51A Allele on Neurological Impairments in the 5xFAD Mouse Model of Alzheimer’s Disease
K Paesler, K Xie, MM Hettich, ME Siwek, DP Ryan, S Schröder, ...
Neural Plasticity 2015 (1), 825157, 2015
322015
RELACS nuclei barcoding enables high-throughput ChIP-seq
L Arrigoni, H Al-Hasani, F Ramírez, I Panzeri, DP Ryan, D Santacruz, ...
Communications biology 1 (1), 214, 2018
302018
High-dose maternal folic acid supplementation before conception impairs reversal learning in offspring mice
KS Henzel, DP Ryan, S Schröder, M Weiergräber, D Ehninger
Scientific reports 7 (1), 3098, 2017
222017
Bison: bisulfite alignment on nodes of a cluster
DP Ryan, D Ehninger
BMC bioinformatics 15, 1-13, 2014
222014
Foxd3 controls heterochromatin‐mediated repression of repeat elements and 2‐cell state transcription
D Puri, B Koschorz, B Engist, M Onishi‐Seebacher, D Ryan, M Soujanya, ...
EMBO reports 22 (12), e53180, 2021
112021
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