| Linearly compressed pages: A low-complexity, low-latency main memory compression framework G Pekhimenko, V Seshadri, Y Kim, H Xin, O Mutlu, PB Gibbons, ... Proceedings of the 46th Annual IEEE/ACM International Symposium on …, 2013 | 177 | 2013 |
| GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies JS Kim, D Senol Cali, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ... BMC genomics 19 (2), 23-40, 2018 | 150 | 2018 |
| Accelerating read mapping with FastHASH H Xin, D Lee, F Hormozdiari, S Yedkar, O Mutlu, C Alkan BMC genomics 14, 1-13, 2013 | 141 | 2013 |
| A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies Z Sun, L Chen, H Xin, Y Jiang, Q Huang, AR Cillo, T Tabib, JK Kolls, ... Nature communications 10 (1), 1649, 2019 | 98 | 2019 |
| GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping M Alser, H Hassan, H Xin, O Ergin, O Mutlu, C Alkan Bioinformatics 33 (21), 3355-3363, 2017 | 98 | 2017 |
| Deep-learning-based prediction of late age-related macular degeneration progression Q Yan, DE Weeks, H Xin, A Swaroop, EY Chew, H Huang, Y Ding, ... Nature machine intelligence 2 (2), 141-150, 2020 | 77 | 2020 |
| Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping H Xin, J Greth, J Emmons, G Pekhimenko, C Kingsford, C Alkan, O Mutlu Bioinformatics 31 (10), 1553-1560, 2015 | 73 | 2015 |
| Mitigating prefetcher-caused pollution using informed caching policies for prefetched blocks V Seshadri, S Yedkar, H Xin, O Mutlu, PB Gibbons, MA Kozuch, TC Mowry ACM Transactions on Architecture and Code Optimization (TACO) 11 (4), 1-22, 2015 | 65 | 2015 |
| Expert consensus on the metaverse in medicine D Yang, J Zhou, R Chen, Y Song, Z Song, X Zhang, Q Wang, K Wang, ... Clinical eHealth 5, 1-9, 2022 | 64 | 2022 |
| Optimal seed solver: optimizing seed selection in read mapping H Xin, S Nahar, R Zhu, J Emmons, G Pekhimenko, C Kingsford, C Alkan, ... Bioinformatics 32 (11), 1632-1642, 2016 | 43 | 2016 |
| A case for unlimited watchpoints JL Greathouse, H Xin, Y Luo, T Austin ACM SIGPLAN Notices 47 (4), 159-172, 2012 | 43 | 2012 |
| BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data X Wang, Z Sun, Y Zhang, Z Xu, H Xin, H Huang, RH Duerr, K Chen, ... Nucleic acids research 48 (11), 5814-5824, 2020 | 36 | 2020 |
| Soda: Detecting covid-19 in chest x-rays with semi-supervised open set domain adaptation J Zhou, B Jing, Z Wang, H Xin, H Tong IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (5 …, 2021 | 29 | 2021 |
| GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing H Xin, Q Lian, Y Jiang, J Luo, X Wang, C Erb, Z Xu, X Zhang, ... Genome biology 21 (1), 1-35, 2020 | 25 | 2020 |
| GRIM-filter: Fast seed filtering in read mapping using emerging memory technologies JS Kim, D Senol, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ... arXiv preprint arXiv:1708.04329, 2017 | 17 | 2017 |
| Fast and accurate mapping of Complete Genomics reads D Lee, F Hormozdiari, H Xin, F Hach, O Mutlu, C Alkan Methods 79, 3-10, 2015 | 14 | 2015 |
| Genome read in-memory (GRIM) filter: Fast location filtering in DNA read mapping using emerging memory technologies J Kim, D Senol, H Xin, D Lee, M Alser, H Hassan, O Ergin, C Alkan, ... Pacific Symp. Biocomputing, 2017 | 9 | 2017 |
| Artificial-cell-type aware cell-type classification in CITE-seq Q Lian, H Xin, J Ma, L Konnikova, W Chen, J Gu, K Chen Bioinformatics 36 (Supplement_1), i542-i550, 2020 | 8 | 2020 |
| Adaptively accelerating map-reduce/spark with GPUs: A case study KR Jayaram, A Gandhi, H Xin, S Tao 2019 IEEE International Conference on Autonomic Computing (ICAC), 105-114, 2019 | 6 | 2019 |
| Leap: A generalization of the landau-vishkin algorithm with custom gap penalties H Xin, J Kim, S Nahar, C Kingsford, C Alkan, O Mutlu bioRxiv, 133157, 2017 | 5 | 2017 |
