| Dissection of regulatory networks that are altered in disease via differential co-expression D Amar, H Safer, R Shamir PLoS Comput Biol 9 (3), e1002955, 2013 | 136 | 2013 |
| A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action S Abadi, WX Yan, D Amar, I Mayrose PLoS computational biology 13 (10), e1005807, 2017 | 83 | 2017 |
| Enhancer methylation dynamics contribute to cancer plasticity and patient mortality RE Bell, T Golan, D Sheinboim, H Malcov, D Amar, A Salamon, T Liron, ... Genome research 26 (5), 601-611, 2016 | 68 | 2016 |
| Analysis of blood-based gene expression in idiopathic Parkinson disease R Shamir, C Klein, D Amar, EJ Vollstedt, M Bonin, M Usenovic, YC Wong, ... Neurology 89 (16), 1676-1683, 2017 | 53 | 2017 |
| Biological insights into muscular strength: genetic findings in the UK Biobank E Tikkanen, S Gustafsson, D Amar, A Shcherbina, D Waggott, EA Ashley, ... Scientific reports 8 (1), 1-9, 2018 | 37 | 2018 |
| Genetics of 35 blood and urine biomarkers in the UK Biobank N Sinnott-Armstrong, Y Tanigawa, D Amar, N Mars, C Benner, M Aguirre, ... Nature Genetics 53 (2), 185-194, 2021 | 35 | 2021 |
| PrtT-regulated proteins secreted by Aspergillus fumigatus activate MAPK signaling in exposed A549 lung cells leading to necrotic cell death H Sharon, D Amar, E Levdansky, G Mircus, Y Shadkchan, R Shamir, ... PloS one 6 (3), e17509, 2011 | 35 | 2011 |
| FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map TA Hait, D Amar, R Shamir, R Elkon Genome biology 19 (1), 1-14, 2018 | 31 | 2018 |
| Evidence of TAF1 dysfunction in peripheral models of X-linked dystonia-parkinsonism A Domingo, D Amar, K Grütz, LV Lee, R Rosales, N Brüggemann, ... Cellular and Molecular Life Sciences 73 (16), 3205-3215, 2016 | 26 | 2016 |
| The MORPH algorithm: ranking candidate genes for membership in Arabidopsis and tomato pathways O Tzfadia, D Amar, LMT Bradbury, ET Wurtzel, R Shamir The Plant Cell 24 (11), 4389-4406, 2012 | 25 | 2012 |
| Constructing module maps for integrated analysis of heterogeneous biological networks D Amar, R Shamir Nucleic acids research 42 (7), 4208-4219, 2014 | 24 | 2014 |
| Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets D Amar, T Hait, S Izraeli, R Shamir Nucleic acids research 43 (16), 7779-7789, 2015 | 23 | 2015 |
| Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise JA Sanford, CD Nogiec, ME Lindholm, JN Adkins, D Amar, S Dasari, ... Cell 181 (1), 1464-1474, 2020 | 21 | 2020 |
| Transcriptional and proteomic analysis of the Aspergillus fumigatus ΔprtT protease-deficient mutant S Hagag, P Kubitschek-Barreira, GWP Neves, D Amar, W Nierman, ... PLoS One 7 (4), e33604, 2012 | 21 | 2012 |
| ABLE: An activity-based level set segmentation algorithm for two-photon calcium imaging data S Reynolds, T Abrahamsson, R Schuck, PJ Sjöström, SR Schultz, ... Eneuro 4 (5), 2017 | 19 | 2017 |
| Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case D Amar, I Frades, A Danek, T Goldberg, SK Sharma, PE Hedley, ... BMC plant biology 14 (1), 1-14, 2014 | 19 | 2014 |
| Utilizing somatic mutation data from numerous studies for cancer research: proof of concept and applications D Amar, S Izraeli, R Shamir Oncogene 36 (24), 3375-3383, 2017 | 15 | 2017 |
| A hierarchical Bayesian model for flexible module discovery in three-way time-series data D Amar, D Yekutieli, A Maron-Katz, T Hendler, R Shamir Bioinformatics 31 (12), i17-i26, 2015 | 12 | 2015 |
| Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate D Amar, R Shamir, D Yekutieli PLoS computational biology 13 (8), e1005700, 2017 | 11 | 2017 |
| Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate D Amar, R Shamir, D Yekutieli PLoS computational biology 13 (8), e1005700, 2017 | 11 | 2017 |
Ron ShamirProfessor of Computer Science and Bioinformatics, Tel Aviv UniversityVerified email at tau.ac.il
