David Amar
Title
Cited by
Cited by
Year
Dissection of regulatory networks that are altered in disease via differential co-expression
D Amar, H Safer, R Shamir
PLoS Comput Biol 9 (3), e1002955, 2013
1362013
A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action
S Abadi, WX Yan, D Amar, I Mayrose
PLoS computational biology 13 (10), e1005807, 2017
832017
Enhancer methylation dynamics contribute to cancer plasticity and patient mortality
RE Bell, T Golan, D Sheinboim, H Malcov, D Amar, A Salamon, T Liron, ...
Genome research 26 (5), 601-611, 2016
682016
Analysis of blood-based gene expression in idiopathic Parkinson disease
R Shamir, C Klein, D Amar, EJ Vollstedt, M Bonin, M Usenovic, YC Wong, ...
Neurology 89 (16), 1676-1683, 2017
532017
Biological insights into muscular strength: genetic findings in the UK Biobank
E Tikkanen, S Gustafsson, D Amar, A Shcherbina, D Waggott, EA Ashley, ...
Scientific reports 8 (1), 1-9, 2018
372018
Genetics of 35 blood and urine biomarkers in the UK Biobank
N Sinnott-Armstrong, Y Tanigawa, D Amar, N Mars, C Benner, M Aguirre, ...
Nature Genetics 53 (2), 185-194, 2021
352021
PrtT-regulated proteins secreted by Aspergillus fumigatus activate MAPK signaling in exposed A549 lung cells leading to necrotic cell death
H Sharon, D Amar, E Levdansky, G Mircus, Y Shadkchan, R Shamir, ...
PloS one 6 (3), e17509, 2011
352011
FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map
TA Hait, D Amar, R Shamir, R Elkon
Genome biology 19 (1), 1-14, 2018
312018
Evidence of TAF1 dysfunction in peripheral models of X-linked dystonia-parkinsonism
A Domingo, D Amar, K Grütz, LV Lee, R Rosales, N Brüggemann, ...
Cellular and Molecular Life Sciences 73 (16), 3205-3215, 2016
262016
The MORPH algorithm: ranking candidate genes for membership in Arabidopsis and tomato pathways
O Tzfadia, D Amar, LMT Bradbury, ET Wurtzel, R Shamir
The Plant Cell 24 (11), 4389-4406, 2012
252012
Constructing module maps for integrated analysis of heterogeneous biological networks
D Amar, R Shamir
Nucleic acids research 42 (7), 4208-4219, 2014
242014
Integrated analysis of numerous heterogeneous gene expression profiles for detecting robust disease-specific biomarkers and proposing drug targets
D Amar, T Hait, S Izraeli, R Shamir
Nucleic acids research 43 (16), 7779-7789, 2015
232015
Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise
JA Sanford, CD Nogiec, ME Lindholm, JN Adkins, D Amar, S Dasari, ...
Cell 181 (1), 1464-1474, 2020
212020
Transcriptional and proteomic analysis of the Aspergillus fumigatus ΔprtT protease-deficient mutant
S Hagag, P Kubitschek-Barreira, GWP Neves, D Amar, W Nierman, ...
PLoS One 7 (4), e33604, 2012
212012
ABLE: An activity-based level set segmentation algorithm for two-photon calcium imaging data
S Reynolds, T Abrahamsson, R Schuck, PJ Sjöström, SR Schultz, ...
Eneuro 4 (5), 2017
192017
Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case
D Amar, I Frades, A Danek, T Goldberg, SK Sharma, PE Hedley, ...
BMC plant biology 14 (1), 1-14, 2014
192014
Utilizing somatic mutation data from numerous studies for cancer research: proof of concept and applications
D Amar, S Izraeli, R Shamir
Oncogene 36 (24), 3375-3383, 2017
152017
A hierarchical Bayesian model for flexible module discovery in three-way time-series data
D Amar, D Yekutieli, A Maron-Katz, T Hendler, R Shamir
Bioinformatics 31 (12), i17-i26, 2015
122015
Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate
D Amar, R Shamir, D Yekutieli
PLoS computational biology 13 (8), e1005700, 2017
112017
Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate
D Amar, R Shamir, D Yekutieli
PLoS computational biology 13 (8), e1005700, 2017
112017
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Articles 1–20