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Jooyoung Lee
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Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8
E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ...
Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009
14092009
New Monte Carlo algorithm: entropic sampling
J Lee
Physical review letters 71 (2), 211, 1993
7441993
New numerical method to study phase transitions
J Lee, JM Kosterlitz
Physical review letters 65 (2), 137, 1990
4001990
New optimization method for conformational energy calculations on polypeptides: conformational space annealing
J Lee, HA Scheraga, S Rackovsky
Journal of computational chemistry 18 (9), 1222-1232, 1997
3961997
Finite-size scaling and Monte Carlo simulations of first-order phase transitions
J Lee, JM Kosterlitz
Physical Review B 43 (4), 3265, 1991
3811991
Ab initio protein structure prediction
J Lee, PL Freddolino, Y Zhang
From protein structure to function with bioinformatics, 3-35, 2017
2842017
Protein structure prediction by global optimization of a potential energy function
A Liwo, J Lee, DR Ripoll, J Pillardy, HA Scheraga
Proceedings of the National Academy of Sciences 96 (10), 5482-5485, 1999
2491999
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
2402019
CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates
SJ Park, J Lee, Y Qi, NR Kern, HS Lee, S Jo, IS Joung, K Joo, J Lee, W Im
Glycobiology 29 (4), 320-331, 2019
2322019
Recent improvements in prediction of protein structure by global optimization of a potential energy function
J Pillardy, C Czaplewski, A Liwo, J Lee, DR Ripoll, R Kaźmierkiewicz, ...
Proceedings of the National Academy of Sciences 98 (5), 2329-2333, 2001
1952001
Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: Application to the 10-55 fragment of …
J Lee, A Liwo, HA Scheraga
Proceedings of the National Academy of Sciences 96 (5), 2025-2030, 1999
1901999
Unbiased Global Optimization of Lennard-Jones Clusters for Using the Conformational Space Annealing Method
J Lee, IH Lee, J Lee
Physical review letters 91 (8), 080201, 2003
1742003
Structural studies of a bacterial condensin complex reveal ATP-dependent disruption of intersubunit interactions
JS Woo, JH Lim, HC Shin, MK Suh, B Ku, KH Lee, K Joo, H Robinson, ...
Cell 136 (1), 85-96, 2009
1662009
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1642016
SVMQA: support–vector-machine-based protein single-model quality assessment
B Manavalan, J Lee
Bioinformatics 33 (16), 2496-2503, 2017
1412017
Phase transitions in coupled XY-Ising systems
E Granato, JM Kosterlitz, J Lee, MP Nightingale
Physical review letters 66 (8), 1090, 1991
1381991
Monte Carlo study of frustrated XY models on a triangular and square lattice
J Lee, JM Kosterlitz, E Granato
Physical Review B 43 (13), 11531, 1991
1351991
First-order melting transition of the hard-disk system
J Lee, KJ Strandburg
Physical Review B 46 (17), 11190, 1992
1271992
Prediction of protein tertiary structure using PROFESY, a novel method based on fragment assembly and conformational space annealing
J Lee, SY Kim, K Joo, I Kim, J Lee
Proteins: Structure, Function, and Bioinformatics 56 (4), 704-714, 2004
1092004
Conformational space annealing by parallel computations: extensive conformational search of Met‐enkephalin and of the 20‐residue membrane‐bound portion of melittin
J Lee, HA Scheraga
International Journal of Quantum Chemistry 75 (3), 255-265, 1999
1041999
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Articles 1–20