Elena Papaleo
Elena Papaleo
Computational Biology Laboratory, Danish Cancer Society Research Center
Verified email at cancer.dk
Title
Cited by
Cited by
Year
The role of protein loops and linkers in conformational dynamics and allostery
E Papaleo, G Saladino, M Lambrughi, K Lindorff-Larsen, FL Gervasio, ...
Chemical reviews 116 (11), 6391-6423, 2016
1712016
Protein aggregation: mechanisms and functional consequences
G Invernizzi, E Papaleo, R Sabate, S Ventura
The international journal of biochemistry & cell biology 44 (9), 1541-1554, 2012
1432012
Free-energy landscape, principal component analysis, and structural clustering to identify representative conformations from molecular dynamics simulations: the myoglobin case
E Papaleo, P Mereghetti, P Fantucci, R Grandori, L De Gioia
Journal of molecular graphics and modelling 27 (8), 889-899, 2009
1362009
ETHE1 mutations are specific to ethylmalonic encephalopathy
V Tiranti, E Briem, E Lamantea, R Mineri, E Papaleo, L De Gioia, F Forlani, ...
Journal of medical genetics 43 (4), 340-346, 2006
852006
Flexibility and enzymatic cold-adaptation: a comparative molecular dynamics investigation of the elastase family
E Papaleo, L Riccardi, C Villa, P Fantucci, L De Gioia
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1764 (8), 1397-1406, 2006
752006
Promoting transparency and reproducibility in enhanced molecular simulations
M Bonomi, G Bussi, C Camilloni, GA Tribello, P Banáš, A Barducci, ...
Nature methods 16 (8), 670-673, 2019
672019
Protein flexibility in psychrophilic and mesophilic trypsins. Evidence of evolutionary conservation of protein dynamics in trypsin-like serine-proteases
E Papaleo, M Pasi, L Riccardi, I Sambi, P Fantucci, L De Gioia
FEBS letters 582 (6), 1008-1018, 2008
652008
PyInteraph: a framework for the analysis of interaction networks in structural ensembles of proteins
M Tiberti, G Invernizzi, M Lambrughi, Y Inbar, G Schreiber, E Papaleo
Journal of chemical information and modeling 54 (5), 1537-1551, 2014
642014
Comparing molecular dynamics force fields in the essential subspace
F Martín-García, E Papaleo, P Gomez-Puertas, W Boomsma, ...
PLoS One 10 (3), e0121114, 2015
592015
xPyder: a PyMOL plugin to analyze coupled residues and their networks in protein structures.
M Pasi, M Tiberti, A Arrigoni, E Papaleo
Journal of chemical information and modeling 52 (7), 1865-1874, 2012
552012
Compaction properties of an intrinsically disordered protein: Sic1 and its kinase-inhibitor domain
S Brocca, L Testa, F Sobott, M Šamalikova, A Natalello, E Papaleo, M Lotti, ...
Biophysical journal 100 (9), 2243-2252, 2011
532011
Dynamic properties of extremophilic subtilisin-like serine-proteases
M Tiberti, E Papaleo
Journal of Structural Biology 174 (1), 69-83, 2011
532011
HUWE1 E3 ligase promotes PINK1/PARKIN-independent mitophagy by regulating AMBRA1 activation via IKKα
A Di Rita, A Peschiaroli, D Pasquale, D Strobbe, Z Hu, J Gruber, ...
Nature communications 9 (1), 1-18, 2018
512018
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily
A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ...
Cell systems 7 (4), 422-437. e7, 2018
492018
Mapping transiently formed and sparsely populated conformations on a complex energy landscape
Y Wang, E Papaleo, K Lindorff-Larsen
Elife 5, e17505, 2016
482016
Integrating atomistic molecular dynamics simulations, experiments, and network analysis to study protein dynamics: strength in unity
E Papaleo
Frontiers in molecular biosciences 2, 28, 2015
462015
Optimization of electrostatics as a strategy for cold-adaptation: a case study of cold-and warm-active elastases
E Papaleo, M Olufsen, L De Gioia, BO Brandsdal
Journal of molecular graphics and modelling 26 (1), 93-103, 2007
442007
Predicting the impact of Lynch syndrome-causing missense mutations from structural calculations
SV Nielsen, A Stein, AB Dinitzen, E Papaleo, MH Tatham, EG Poulsen, ...
PLoS Genetics 13 (4), e1006739, 2017
432017
An optimal distance cutoff for contact-based Protein Structure Networks using side-chain centers of mass
JS Viloria, MF Allega, M Lambrughi, E Papaleo
Scientific reports 7 (1), 1-11, 2017
422017
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx
M Mounir, M Lucchetta, TC Silva, C Olsen, G Bontempi, X Chen, ...
PLoS computational biology 15 (3), e1006701, 2019
402019
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