Elena Papaleo
Elena Papaleo
Computational Biology Laboratory, Danish Cancer Society Research Center
Email verificata su cancer.dk
TitoloCitata daAnno
The role of protein loops and linkers in conformational dynamics and allostery
E Papaleo, G Saladino, M Lambrughi, K Lindorff-Larsen, FL Gervasio, ...
Chemical reviews 116 (11), 6391-6423, 2016
Protein aggregation: mechanisms and functional consequences
G Invernizzi, E Papaleo, R Sabate, S Ventura
The international journal of biochemistry & cell biology 44 (9), 1541-1554, 2012
Free-energy landscape, principal component analysis, and structural clustering to identify representative conformations from molecular dynamics simulations: the myoglobin case
E Papaleo, P Mereghetti, P Fantucci, R Grandori, L De Gioia
Journal of molecular graphics and modelling 27 (8), 889-899, 2009
ETHE1 mutations are specific to ethylmalonic encephalopathy
V Tiranti, E Briem, E Lamantea, R Mineri, E Papaleo, L De Gioia, F Forlani, ...
Journal of medical genetics 43 (4), 340-346, 2006
Flexibility and enzymatic cold-adaptation: a comparative molecular dynamics investigation of the elastase family
E Papaleo, L Riccardi, C Villa, P Fantucci, L De Gioia
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1764 (8), 1397-1406, 2006
Protein flexibility in psychrophilic and mesophilic trypsins. Evidence of evolutionary conservation of protein dynamics in trypsin‐like serine‐proteases
E Papaleo, M Pasi, L Riccardi, I Sambi, P Fantucci, LD Gioia
FEBS letters 582 (6), 1008-1018, 2008
PyInteraph: a framework for the analysis of interaction networks in structural ensembles of proteins
M Tiberti, G Invernizzi, M Lambrughi, Y Inbar, G Schreiber, E Papaleo
Journal of chemical information and modeling 54 (5), 1537-1551, 2014
xPyder: a PyMOL plugin to analyze coupled residues and their networks in protein structures.
M Pasi, M Tiberti, A Arrigoni, E Papaleo
Journal of chemical information and modeling 52 (7), 1865-1874, 2012
Comparing molecular dynamics force fields in the essential subspace
F Martín-García, E Papaleo, P Gomez-Puertas, W Boomsma, ...
PLoS One 10 (3), 2015
Dynamic properties of extremophilic subtilisin-like serine-proteases
M Tiberti, E Papaleo
Journal of Structural Biology 174 (1), 69-83, 2011
Compaction properties of an intrinsically disordered protein: Sic1 and its kinase-inhibitor domain
S Brocca, L Testa, F Sobott, M Šamalikova, A Natalello, E Papaleo, M Lotti, ...
Biophysical journal 100 (9), 2243-2252, 2011
Integrating atomistic molecular dynamics simulations, experiments, and network analysis to study protein dynamics: strength in unity
E Papaleo
Frontiers in molecular biosciences 2, 28, 2015
Optimization of electrostatics as a strategy for cold-adaptation: a case study of cold-and warm-active elastases
E Papaleo, M Olufsen, L De Gioia, BO Brandsdal
Journal of molecular graphics and modelling 26 (1), 93-103, 2007
Mechanisms of intramolecular communication in a hyperthermophilic acylaminoacyl peptidase: a molecular dynamics investigation
E Papaleo, G Renzetti, M Tiberti
PloS one 7 (4), 2012
Mapping transiently formed and sparsely populated conformations on a complex energy landscape
Y Wang, E Papaleo, K Lindorff-Larsen
Elife 5, e17505, 2016
Conformational changes and free energies in a proline isomerase
E Papaleo, L Sutto, FL Gervasio, K Lindorff-Larsen
Journal of Chemical Theory and Computation 10 (9), 4169-4174, 2014
Molecular dynamics of mesophilic-like mutants of a cold-adapted enzyme: insights into distal effects induced by the mutations
E Papaleo, M Pasi, M Tiberti, L De Gioia
PLoS One 6 (9), 2011
Predicting the impact of Lynch syndrome-causing missense mutations from structural calculations
SV Nielsen, A Stein, AB Dinitzen, E Papaleo, MH Tatham, EG Poulsen, ...
PLoS genetics 13 (4), e1006739, 2017
The role of salt bridges on the temperature adaptation of aqualysin I, a thermostable subtilisin-like proteinase
LB Jónsdóttir, BÖ Ellertsson, G Invernizzi, M Magnúsdóttir, ...
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (12), 2174-2181, 2014
Molecular determinants of enzyme cold adaptation: Comparative structural and computational studies of cold-and warm-adapted enzymes
E Papaleo, M Tiberti, G Invernizzi, M Pasi, V Ranzani
Current Protein and Peptide Science 12 (7), 657-683, 2011
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