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Jacob L Steenwyk
Jacob L Steenwyk
HHMI Awardee of the LSRF & Berkeley Science Fellow at HHMI & UC-Berkeley
Email verificata su berkeley.edu - Home page
Titolo
Citata da
Citata da
Anno
Tempo and mode of genome evolution in the budding yeast subphylum
XX Shen, DA Opulente, J Kominek, X Zhou, JL Steenwyk, KV Buh, ...
Cell 175 (6), 1533-1545. e20, 2018
4292018
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
JL Steenwyk, TJ Buida III, Y Li, XX Shen, A Rokas
PLoS biology 18 (12), e3001007, 2020
2352020
A genome-scale phylogeny of the kingdom Fungi
Y Li, JL Steenwyk, Y Chang, Y Wang, TY James, JE Stajich, JW Spatafora, ...
Current Biology 31 (8), 1653-1665. e5, 2021
1892021
Gene essentiality analyzed by in vivo transposon mutagenesis and machine learning in a stable haploid isolate of Candida albicans
ES Segal, V Gritsenko, A Levitan, B Yadav, N Dror, JL Steenwyk, ...
MBio 9 (5), e02048-18, 2018
1142018
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota
XX Shen, JL Steenwyk, AL LaBella, DA Opulente, X Zhou, J Kominek, Y Li, ...
Science Advances 6 (45), eabd0079, 2020
1092020
Biosynthetic gene clusters and the evolution of fungal chemodiversity
A Rokas, ME Mead, JL Steenwyk, HA Raja, NH Oberlies
Natural product reports 37 (7), 868-878, 2020
1082020
A robust phylogenomic time tree for biotechnologically and medically important fungi in the genera Aspergillus and Penicillium
JL Steenwyk, XX Shen, AL Lind, GH Goldman, A Rokas
MBio 10 (4), e00925-19, 2019
1022019
Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts
JL Steenwyk, DA Opulente, J Kominek, XX Shen, X Zhou, AL Labella, ...
PLoS Biology 17 (5), e3000255, 2019
992019
Variation and selection on codon usage bias across an entire subphylum
AL Labella, DA Opulente, JL Steenwyk, CT Hittinger, A Rokas
PLoS Genetics 15 (7), e1008304, 2019
802019
PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data
JL Steenwyk, TJ Buida III, AL Labella, Y Li, XX Shen, A Rokas
Bioinformatics 37 (16), 2325-2331, 2021
752021
Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains
J Steenwyk, A Rokas
G3: Genes, Genomes, Genetics 7 (5), 1475-1485, 2017
582017
Rapid phenotypic and metabolomic domestication of wild Penicillium molds on cheese
I Bodinaku, J Shaffer, A Connors, J Steenwyk, E Kastman, A Rokas, ...
MBio 10 (5), e02445-19, 2019
522019
Nutritional Heterogeneity Among Aspergillus fumigatus Strains Has Consequences for Virulence in a Strain- and Host-Dependent Manner
LNA Ries, JL Steenwyk, PA de Castro, PBA de Lima, F Almeida, ...
Frontiers in microbiology 10, 854, 2019
512019
Copy number variation in fungi and its implications for wine yeast genetic diversity and adaptation
JL Steenwyk, A Rokas
Frontiers in microbiology 9, 340048, 2018
492018
Variation Among Biosynthetic Gene Clusters, Secondary Metabolite Profiles, and Cards of Virulence Across Aspergillus Species
JL Steenwyk, ME Mead, SL Knowles, HA Raja, CD Roberts, O Bader, ...
Genetics 216 (2), 481-497, 2020
472020
Characterizing the Pathogenic, Genomic, and Chemical Traits of Aspergillus fischeri, a Close Relative of the Major Human Fungal Pathogen Aspergillus fumigatus
ME Mead, SL Knowles, HA Raja, SR Beattie, CH Kowalski, JL Steenwyk, ...
Msphere 4 (1), e00018-19, 2019
462019
Mapping the fungal battlefield: using in situ chemistry and deletion mutants to monitor interspecific chemical interactions between fungi
SL Knowles, HA Raja, AJ Wright, AML Lee, LK Caesar, ME Mead, ...
Frontiers in Microbiology 10, 441244, 2019
442019
Pathogenic allodiploid hybrids of Aspergillus fungi
JL Steenwyk, AL Lind, LNA Ries, TF Dos Reis, LP Silva, F Almeida, ...
Current Biology 30 (13), 2495-2507. e7, 2020
412020
Genomic and phenotypic heterogeneity of clinical isolates of the human pathogens Aspergillus fumigatus, Aspergillus lentulus, and Aspergillus fumigatiaffinis
RAC Dos Santos, JL Steenwyk, O Rivero-Menendez, ME Mead, LP Silva, ...
Frontiers in genetics 11, 539134, 2020
412020
Evolving moldy murderers: Aspergillus section Fumigati as a model for studying the repeated evolution of fungal pathogenicity
A Rokas, ME Mead, JL Steenwyk, NH Oberlies, GH Goldman
PLoS pathogens 16 (2), e1008315, 2020
412020
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
Articoli 1–20