|A robust SNP barcode for typing Mycobacterium tuberculosis complex strains|
F Coll, R McNerney, JA Guerra-Assunção, JR Glynn, J Perdigão, ...
Nature communications 5 (1), 1-5, 2014
|Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences|
F Coll, R McNerney, MD Preston, JA Guerra-Assunção, A Warry, ...
Genome medicine 7 (1), 1-10, 2015
|Genome-wide analysis of multi-and extensively drug-resistant Mycobacterium tuberculosis|
F Coll, J Phelan, GA Hill-Cawthorne, MB Nair, K Mallard, S Ali, ...
Nature genetics 50 (2), 307-316, 2018
|Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area|
JA Guerra-Assunção, AC Crampin, R Houben, T Mzembe, K Mallard, ...
Elife 4, e05166, 2015
|Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a …|
JA Guerra-Assunção, RMGJ Houben, AC Crampin, T Mzembe, K Mallard, ...
The Journal of infectious diseases 211 (7), 1154-1163, 2015
|Whole-genome sequencing coupled to imputation discovers genetic signals for anthropometric traits|
I Tachmazidou, D Süveges, JL Min, GRS Ritchie, J Steinberg, K Walter, ...
The American Journal of Human Genetics 100 (6), 865-884, 2017
|SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences|
F Coll, K Mallard, MD Preston, S Bentley, J Parkhill, R McNerney, N Martin, ...
Bioinformatics 28 (22), 2991-2993, 2012
|Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance|
J Phelan, F Coll, R McNerney, DB Ascher, DEV Pires, N Furnham, ...
BMC medicine 14 (1), 1-13, 2016
|PolyTB: a genomic variation map for Mycobacterium tuberculosis|
F Coll, M Preston, JA Guerra-Assunção, G Hill-Cawthorn, D Harris, ...
Tuberculosis 94 (3), 346-354, 2014
|Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community|
F Coll, EM Harrison, MS Toleman, S Reuter, KE Raven, B Blane, ...
Science translational medicine 9 (413), 2017
|Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing|
TG Clark, K Mallard, F Coll, M Preston, S Assefa, D Harris, S Ogwang, ...
PloS one 8 (12), e83012, 2013
|Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations|
AM Abdallah, GA Hill-Cawthorne, TD Otto, F Coll, JA Guerra-Assunção, ...
Scientific reports 5 (1), 1-15, 2015
|One health genomic surveillance of Escherichia coli demonstrates distinct lineages and mobile genetic elements in isolates from humans versus livestock|
C Ludden, KE Raven, D Jamrozy, T Gouliouris, B Blane, F Coll, ...
MBio 10 (1), e02693-18, 2019
|Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting|
J Perdigão, H Silva, D Machado, R Macedo, F Maltez, C Silva, L Jordao, ...
BMC genomics 15 (1), 1-20, 2014
|Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan|
A Ali, Z Hasan, R McNerney, K Mallard, G Hill-Cawthorne, F Coll, M Nair, ...
PloS one 10 (2), e0117771, 2015
|Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing|
KE Raven, T Gouliouris, H Brodrick, F Coll, NM Brown, R Reynolds, ...
Clinical infectious diseases 64 (7), 886-893, 2017
|Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages|
JE Phelan, F Coll, I Bergval, RM Anthony, R Warren, SL Sampson, ...
BMC genomics 17 (1), 1-12, 2016
|Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study|
KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ...
The Lancet Infectious Diseases, 2021
|Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing|
C Ludden, S Reuter, K Judge, T Gouliouris, B Blane, F Coll, P Naydenova, ...
Microbial genomics 3 (7), 2017
|Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks|
EM Harrison, C Ludden, HJ Brodrick, B Blane, G Brennan, D Morris, ...
Genome medicine 8 (1), 1-9, 2016