| HIPPIE v2. 0: enhancing meaningfulness and reliability of protein–protein interaction networks G Alanis-Lobato, MA Andrade-Navarro, MH Schaefer Nucleic acids research, gkw985, 2016 | 507 | 2016 |
| HIPPIE: Integrating protein interaction networks with experiment based quality scores MH Schaefer, JF Fontaine, A Vinayagam, P Porras, EE Wanker, ... PloS one 7 (2), e31826, 2012 | 403 | 2012 |
| Evolution and function of CAG/polyglutamine repeats in protein–protein interaction networks MH Schaefer, EE Wanker, MA Andrade-Navarro Nucleic acids research 40 (10), 4273-4287, 2012 | 249 | 2012 |
| MedlineRanker: flexible ranking of biomedical literature JF Fontaine, A Barbosa-Silva, M Schaefer, MR Huska, EM Muro, ... Nucleic acids research 37 (suppl 2), W141-W146, 2009 | 138 | 2009 |
| Spatiotemporal proteomic profiling of Huntington’s disease inclusions reveals widespread loss of protein function F Hosp, S Gutiérrez-Ángel, MH Schaefer, J Cox, F Meissner, MS Hipp, ... Cell reports 21 (8), 2291-2303, 2017 | 127 | 2017 |
| Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome L Zapata, O Pich, L Serrano, FA Kondrashov, S Ossowski, MH Schaefer Genome biology 19, 1-17, 2018 | 109 | 2018 |
| Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions MH Schaefer, TJS Lopes, N Mah, JE Shoemaker, Y Matsuoka, ... PLOS Computational Biology 9 (1), e1002860, 2013 | 106 | 2013 |
| Cell type-specific properties and environment shape tissue specificity of cancer genes MH Schaefer, L Serrano Scientific reports 6 (1), 20707, 2016 | 96 | 2016 |
| Molecular Insights into Reprogramming-Initiation Events Mediated by the OSKM Gene Regulatory Network N Mah, Y Wang, MC Liao, A Prigione, J Jozefczuk, B Lichtner, K Wolfrum, ... PloS one 6 (8), e24351, 2011 | 89 | 2011 |
| Interactome mapping provides a network of neurodegenerative disease proteins and uncovers widespread protein aggregation in affected brains C Haenig, N Atias, AK Taylor, A Mazza, MH Schaefer, J Russ, ... Cell reports 32 (7), 2020 | 87 | 2020 |
| Correcting for the study bias associated with protein–protein interaction measurements reveals differences between protein degree distributions from different cancer types MH Schaefer, L Serrano, MA Andrade-Navarro Frontiers in genetics 6, 260, 2015 | 82 | 2015 |
| Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases TJS Lopes, M Schaefer, J Shoemaker, Y Matsuoka, J Fontaine, ... Bioinformatics 27 (17), 2414-2421, 2011 | 70 | 2011 |
| Translational efficiency across healthy and tumor tissues is proliferation‐related X Hernandez‐Alias, H Benisty, MH Schaefer, L Serrano Molecular systems biology 16 (3), e9275, 2020 | 61 | 2020 |
| SynSysNet: integration of experimental data on synaptic protein–protein interactions with drug-target relations J von Eichborn, M Dunkel, BO Gohlke, SC Preissner, MF Hoffmann, ... Nucleic Acids Research 41 (D1), D834-D840, 2013 | 54 | 2013 |
| Aggregation of polyQ‐extended proteins is promoted by interaction with their natural coiled‐coil partners S Petrakis, MH Schaefer, EE Wanker, MA Andrade‐Navarro Bioessays 35 (6), 503-507, 2013 | 51 | 2013 |
| Tissue-specific DNA methylation loss during ageing and carcinogenesis is linked to chromosome structure, replication timing and cell division rates M Dmitrijeva, S Ossowski, L Serrano, MH Schaefer Nucleic acids research 46 (14), 7022-7039, 2018 | 49 | 2018 |
| Functional and genomic analyses of alpha-solenoid proteins D Fournier, GA Palidwor, S Shcherbinin, A Szengel, MH Schaefer, ... PLoS One 8 (11), e79894, 2013 | 45 | 2013 |
| The cis‐regulatory code of Hox function in Drosophila S Sorge, N Ha, M Polychronidou, J Friedrich, D Bezdan, P Kaspar, ... The EMBO journal 31 (15), 3323-3333, 2012 | 45 | 2012 |
| GZMKhigh CD8+ T effector memory cells are associated with CD15high neutrophil abundance in non-metastatic colorectal tumors and predict poor clinical outcome S Tiberti, C Catozzi, O Croci, M Ballerini, D Cagnina, C Soriani, ... Nature communications 13 (1), 6752, 2022 | 44 | 2022 |
| A comprehensive view of the β-arrestinome P Crépieux, A Poupon, N Langonné-Gallay, E Reiter, J Delgado, ... Frontiers in Endocrinology 8, 32, 2017 | 37 | 2017 |
