| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 12635 | 2012 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 800 | 2013 |
| Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Annual International Conference on Research in Computational Molecular …, 2013 | 486 | 2013 |
| Versatile genome assembly evaluation with QUAST-LG A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich Bioinformatics 34 (13), i142-i150, 2018 | 207 | 2018 |
| rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data E Bushmanova, D Antipov, A Lapidus, AD Prjibelski GigaScience 8 (9), giz100, 2019 | 122 | 2019 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 85 | 2014 |
| rnaQUAST: a quality assessment tool for de novo transcriptome assemblies E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski Bioinformatics 32 (14), 2210-2212, 2016 | 65 | 2016 |
| Icarus: visualizer for de novo assembly evaluation A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich Bioinformatics 32 (21), 3321-3323, 2016 | 55 | 2016 |
| Versatile genome assembly evaluation with QUAST-LG. Bioinformatics 34: i142–i150 A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich | 50 | 2018 |
| Assembling short reads from jumping libraries with large insert sizes I Vasilinetc, AD Prjibelski, A Gurevich, A Korobeynikov, PA Pevzner Bioinformatics 31 (20), 3262-3268, 2015 | 36 | 2015 |
| Using SPAdes de novo assembler A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov Current Protocols in Bioinformatics 70 (1), e102, 2020 | 26 | 2020 |
| De novo peptide sequencing reveals many cyclopeptides in the human gut and other environments B Behsaz, H Mohimani, A Gurevich, A Prjibelski, M Fisher, F Vargas, ... Cell systems 10 (1), 99-108. e5, 2020 | 9 | 2020 |
| A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ... Nature Communications 12 (1), 1-16, 2021 | 8* | 2021 |
| Seed transcriptome annotation reveals enhanced expression of genes related to ROS homeostasis and ethylene metabolism at alternating temperatures in wild cardoon HR Huarte, G Puglia, AD Prjibelski, SA Raccuia Plants 9 (9), 1225, 2020 | 6 | 2020 |
| Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.) GD Puglia, AD Prjibelski, D Vitale, E Bushmanova, KJ Schmid, ... BMC genomics 21 (1), 1-17, 2020 | 5 | 2020 |
| SGTK: a toolkit for visualization and assessment of scaffold graphs O Kunyavskaya, AD Prjibelski Bioinformatics 35 (13), 2303-2305, 2019 | 5 | 2019 |
| De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments. B Behsaz, H Mohimani, AA Gurevich, AD Prjibelski, MF Fisher, L Smarr, ... RECOMB, 289-291, 2019 | 5 | 2019 |
| Extending rnaSPAdes functionality for hybrid transcriptome assembly AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ... BMC Bioinformatics 21 (302), 2020 | 2 | 2020 |
| Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish KA Demin, AM Lakstygal, NA Krotova, A Masharsky, N Tagawa, ... Scientific reports 10 (1), 1-20, 2020 | 1 | 2020 |
| Human pericentromeric tandemly repeated DNA is transcribed at the end of oocyte maturation and is associated with membraneless mitochondria-associated structures MA Dobrynin, NM Korchagina, AD Prjibelski, D Shafranskaya, ... Scientific reports 10 (1), 1-15, 2020 | 1 | 2020 |
Alexey GurevichSenior Researcher @ Center for Algorithmic Biotechnology, Saint Petersburg State UniversityVerified email at spbu.ru
