| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 17809 | 2012 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1025 | 2013 |
| Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Annual International Conference on Research in Computational Molecular …, 2013 | 718* | 2013 |
| Using SPAdes de novo assembler A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov Current protocols in bioinformatics 70 (1), e102, 2020 | 485 | 2020 |
| Versatile genome assembly evaluation with QUAST-LG A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich Bioinformatics 34 (13), i142-i150, 2018 | 466 | 2018 |
| rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data E Bushmanova, D Antipov, A Lapidus, AD Prjibelski GigaScience 8 (9), giz100, 2019 | 329 | 2019 |
| ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014 | 105 | 2014 |
| Versatile genome assembly evaluation with QUAST-LG. Bioinformatics 34: i142–i150 A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich | 99 | 2018 |
| rnaQUAST: a quality assessment tool for de novo transcriptome assemblies E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski Bioinformatics 32 (14), 2210-2212, 2016 | 98 | 2016 |
| Icarus: visualizer for de novo assembly evaluation A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich Bioinformatics 32 (21), 3321-3323, 2016 | 89 | 2016 |
| A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ... Nature Communications 12 (1), 463, 2021 | 70 | 2021 |
| Assembling short reads from jumping libraries with large insert sizes I Vasilinetc, AD Prjibelski, A Gurevich, A Korobeynikov, PA Pevzner Bioinformatics 31 (20), 3262-3268, 2015 | 48 | 2015 |
| De novo peptide sequencing reveals many cyclopeptides in the human gut and other environments B Behsaz, H Mohimani, A Gurevich, A Prjibelski, M Fisher, F Vargas, ... Cell systems 10 (1), 99-108. e5, 2020 | 29 | 2020 |
| Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ... Nature biotechnology 40 (7), 1082-1092, 2022 | 21 | 2022 |
| Systematic assessment of long-read RNA-seq methods for transcript identification and quantification F Pardo-Palacios, F Reese, S Carbonell-Sala, M Diekhans, C Liang, ... | 18 | 2021 |
| Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.) GD Puglia, AD Prjibelski, D Vitale, E Bushmanova, KJ Schmid, ... BMC genomics 21 (1), 1-17, 2020 | 16 | 2020 |
| Extending rnaSPAdes functionality for hybrid transcriptome assembly AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ... BMC Bioinformatics 21 (302), 2020 | 16 | 2020 |
| Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish KA Demin, AM Lakstygal, NA Krotova, A Masharsky, N Tagawa, ... Scientific reports 10 (1), 19981, 2020 | 13 | 2020 |
| Seed transcriptome annotation reveals enhanced expression of genes related to ROS homeostasis and ethylene metabolism at alternating temperatures in wild cardoon HR Huarte, GD Puglia, AD Prjibelski, SA Raccuia Plants 9 (9), 1225, 2020 | 12 | 2020 |
| Sequence analysis AD Prjibelski, AI Korobeynikov, AL Lapidus Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2018 | 10 | 2018 |
Alexey GurevichJun. Prof. of Bioinformatics, Helmholtz Inst. for Pharm. Res. Saarland (HIPS) & Saarland UniversityVerified email at helmholtz-hips.de
